Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031037.1 Length=163041 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq6 129 6e-25 seq16 120 3e-22 seq361 118 1e-21 seq8 109 6e-19 >seq7 Length=350003 Score = 131 bits (144), Expect = 2e-25 Identities = 199/283 (70%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 48286 AGCAACAGCCTATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTACT 48345 ||| ||||| |||||||| || ||| || ||||| ||| || |||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTTT 229056 Query 48346 GACAGCTACAGGTTTTGACTTAACAGCAAATCCCTCAGCAAAAGTTATCGCAGTTGACCC 48405 || || | || ||| ||||| |||||||| | | |||||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCAGTTGACCC 229116 Query 48406 ACGAGTAATTCCACTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATC 48465 |||||| ||| |||| |||||||| |||||||| || ||| ||| || || Sbjct 229117 GAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTGG 229176 Query 48466 AGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCA 48525 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | | Sbjct 229177 TGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTAA 229236 Query 48526 GTCTAGTAACTGGGGCGTACGAACAGTAAAAGTAACAATCTTA 48568 ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229237 AGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq6 Length=382643 Score = 129 bits (142), Expect = 6e-25 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 48363 ACTTAACAGCAAATCCCTCAGCA--AAAGTTATCGCAGTTGACCCACGAGTAATTCCACT 48420 |||||||||| ||||| | || ||| | || |||||||| ||| | || |||||| | Sbjct 339029 ACTTAACAGCTAATCCA--AACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATT 339086 Query 48421 AGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGC 48480 ||| || ||||| || ||||| |||||| |||||| || |||||||||||||| Sbjct 339087 AGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGC 339146 Query 48481 TATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGG 48540 ||| ||||| ||| |||||| || |||||||| |||| | || |||| |||||| Sbjct 339147 TATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGG 339206 Query 48541 -CGTACGAACAGTAAAAGTAACAATCTTAAACTAGT 48575 |||| |||||| | ||| | | | |||||||||| Sbjct 339207 ACGTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq16 Length=199848 Score = 120 bits (132), Expect = 3e-22 Identities = 238/346 (69%), Gaps = 16/346 (5%) Strand=Plus/Plus Query 48239 GAGTCTTACACAGAGACTACACCA---CAAGGT--AAAACAATCGTA-GTGAAAGCAACA 48292 |||||| | | || || | |||| |||||| |||| ||| || || | |||||| Sbjct 160142 GAGTCTAAGCCTGATACGAAACCAACTCAAGGTGGAAAAGAATTTTACGTAACAGCAACC 160201 Query 48293 GCCTATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTACTGACAGCT 48352 || ||||| || |||||| | || || ||| || |||| | ||| | | || Sbjct 160202 GCTTATACAGCTGACCCATCTGAAAACGGCTATAAACCGGGTGAAACTGTA---AAATCT 160258 Query 48353 AC---AGGTTTTGACTTAACAGCAAATCCCTCAGCA--AAAGTTATCGCAGTTGACCCAC 48407 | ||| | | ||||| |||||||| | || ||| | || || || || ||| Sbjct 160259 AAGTTAGGACATAATTTAACTGCAAATCCA--AACATGAAATTAATTGCTGTAGATCCAT 160316 Query 48408 GAGTAATTCCACTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAG 48467 || || ||| |||| |||| || ||||||||||||| |||||||||||||| || Sbjct 160317 CTGTTATCCCATTAGGTTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAG 160376 Query 48468 ATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGT 48527 |||||||| | || || ||||| || || ||| |||||||||| | | |||| Sbjct 160377 ATACTGGTAGTGCAATAAAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAG 160436 Query 48528 CTAGTAACTGGGGCGTACGAACAGTAAAAGTAACAATCTTAAACTA 48573 ||| | ||||||| | ||||||| ||||| | ||| |||||||| Sbjct 160437 CTAATGACTGGGGTAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq361 Length=20807 Score = 118 bits (130), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 48285 AAGCAACAGCCTATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 48344 |||| || || ||||| || || || |||||||| | |||| ||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGGTGGTCGTGTAT 1124 Query 48345 TGACAGCTACAGGTTTTGACTTAACAGCAAATCCCTCAGCAAAAGTTATCGCAGTTGACC 48404 | || || | || ||| |||||||||||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 48405 CACGAGTAATTCCACTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 48464 | ||||||||| || || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 48465 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 48508 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq8 Length=318055 Score = 109 bits (120), Expect = 6e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 48286 AGCAACAGCCTATACTGCCGACCC-AGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 48344 ||| ||||| ||||| || |||| ||| || || || || || || || || || ||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGGCCGTGTAT 28478 Query 48345 TGACAGCTACAGGTTTTGACTTAACAGCAAATCCCTCAGCAAAAGTTATCGCAGTTGACC 48404 | || || | ||| ||| ||||| || ||||| ||| | ||||| ||||||| Sbjct 28477 TAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 48405 CACGAGTAATTCCACTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 48464 | |||||| ||| |||| |||||||| |||||||| |||||| ||| || || Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 48465 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 48508 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521567698382200