Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq2 416 5e-111 >seq2 Length=633208 Score = 416 bits (460), Expect = 5e-111 Identities = 1197/1810 (66%), Gaps = 41/1810 (2%) Strand=Plus/Minus Query 190825 ATAGTAAAGACTCTTTAAACCACGTTTATTGGCATAATACATA-TGACCAACTAATTGAT 190883 ||| || ||||||||||| || ||||| ||||| | || | || |||||| | Sbjct 185577 ATAATACAGACTCTTTAAGCCTTTTTTATGTGCATAG-ATGTAGTAACGTGCTAATTCAC 185519 Query 190884 CTGTAGGGATATCACTATTGACAAATAAAGTAGTAGAAATACCCTGATCAATATGTTGTT 190943 ||| | ||||||||||| || | | | | ||| ||| || || |||||||||| || Sbjct 185518 GTGTTGAAATATCACTATTAACGTAAAGAATTGTACTAATTCCTTGGTCAATATGTTCTT 185459 Query 190944 GGATTACTGCAACCATGTCAATAATTTTATTTTGATCCATATCATATGCTGATTTGTAAG 191003 | ||| |||| | | ||||| | |||| |||| |||||| || | ||||| || Sbjct 185458 GAATTTCTGCGATTAAATCAATTAATTTAAACTGATTCATATCGTAAGAAGATTTATAGT 185399 Query 191004 ACCATTGAGT-TCTACCGTCTAGATATGGCATTGGATAGTATGTTGTAGAGTCATGATAT 191062 |||| || ||| | || ||| ||||||||||| |||||||| | | |||| Sbjct 185398 ACCAGAACGTATCTTTTGA-TAAATACGGCATTGGATAATATGTTGTCGCATTCGCATAT 185340 Query 191063 GTTCTGTTTTCAATTCGACTTACAACTGGCATAATAGATTGA-GTTGAATTCTGTACATA 191121 ||||| ||| ||| ||||||| | ||||| | | |||| |||| ||| || || || Sbjct 185339 GTTCTTGATTCGATTTGACTTACGATCGGCATTAC-GCTTGAAGTTGCATTTTGAACGTA 185281 Query 191122 ACTAATTGACTGTGTAGGTGCAATAGCAAGTCTATAAGCATGGTATAAACCATTTTCTTT 191181 ||| ||||| ||||| || ||||| ||||| | ||| | | |||||||||||| | | Sbjct 185280 ACTGATTGATTGTGTTGGAGCAATGGCAAGACGATATGAGTTGTATAAACCATTCTTCTG 185221 Query 191182 TACTTGTTCTGCTAATTCAGCCCAATCTTCTTTTGTTGGAACAAAGATTCCCTCAAATAA 191241 |||||| ||| ||| | |||||||||||||||||||| | ||||| ||||||| Sbjct 185220 TACTTGCTCTTTTAAACTTGTCCAATCTTCTTTTGTTGGAATATGAATTCCTTCAAATAG 185161 Query 191242 TTCTTTTACTTTTTGACTTCTAGGTGTATAATCATTTTCGAT--ATAACGTTTAAAATAA 191299 || | ||||||| | || || | ||||| | ||| | ||| || || || Sbjct 185160 TTGCTGAACTTTTTCAGTTACTGGGCTGTAATC--TGTCGTTTCATACTTTTCGAAGTAT 185103 Query 191300 TTACCATTAGCATATTCAGAATCTTCAAAACGATGGAAttttttatttttCTCAATAGCA 191359 | ||||| ||||| ||||| | || || | ||| | | ||| || |||| Sbjct 185102 GTGCCATTCGCATAATCAGATTTATCGAAGTCCTTAAATGTCTCGCCTTTTTCTGTAGCG 185043 Query 191360 ATTTCCATACTTCGTCT-AATACTATGGAAATTCATAATTGCAAAGAATACATTGGCAAA 191418 |||||||||||| ||| |||| | | |||| | || ||||||| | || || Sbjct 185042 ATTTCCATACTT-TTCTCAATAGAGTAGTAATTTAACATCATAAAGAATGTACGAGCGAA 184984 Query 191419 ATCTCTAGCTACAGCACTTTCATATGAAATACTATTTTTAGCAAGGAAACCATGTAAGTT 191478 ||| | ||| | ||||||||||| | || ||||||| || | | || |||||||| Sbjct 184983 TTCTTTCGCTTCTGCACTTTCATAAGCGATTTTATTTTTTGCTAAATATCCGTGTAAGTT 184924 Query 191479 CATTGCGCCTAAACCAACTGAATGGAATAGAGCATTTGCTTTTCTTATAGATGGTGCATT 191538 |||||| || | ||||||||||| | ||||||||||| | | || ||||||||| Sbjct 184923 CATTGCTCCAAGTCCAACTGAATGAAGCTCGTCATTTGCTTTTTTCACAGTTGGTGCATT 184864 Query 191539 TTTGATATCACTCTTATCTGTTACAGATGTTAAAATATCCATTGCAATATCTACAGAATC 191598 ||| || |||| | |||| ||||||| |||||| | || || | || Sbjct 184863 CGGAATAATCGTCATATCAGAAACAGCTGTTAAAGCTTCCATTCCCGCATGAACTGCTTC 184804 Query 191599 TTTAAATTTTTTAGTCTCCATTACATTAACGATATTTAATGATGCAAGGTTACAACTGAT 191658 || || |||| | |||||||| || ||||||||||| ||| | | |||||| | || Sbjct 184803 ACGAATTTCTTTATTTTCCATTACGTTTACGATATTTAACGATCCTAAGTTACAGTTAAT 184744 Query 191659 -TC-CCAATCCTAATTCATCTTCTTCTCCATAATTATTAATTACTGATACTGAACTTAA- 191715 || | | |||| || ||| || |||| ||| ||| |||| | | | || Sbjct 184743 ATCACGACGGATAAT--GTCATCTGTACCGTAATCATTTATTTCTGA-AGTTTCTTGAAG 184687 Query 191716 CTGCATAATTTCAGTACAAAGGTTAGAGAATTTAATTTCACCAATTGCTTTTAAAGCATG 191775 ||| | ||||| ||||| | ||| || | || | ||||| | || || | ||| Sbjct 184686 CTGGAAGATTTCTGTACATAAGTTCGACATCTTCACAGTTCCAATATCCTTCAATGGATG 184627 Query 191776 TTCTTTATTAGCATTTGTTTTGAAGAACAGATAAGGGTATCCTGATTCTAATTGAGTCAT 191835 || ||||| ||||||| ||| || | | || ||||| || || || | ||| |||| Sbjct 184626 TTGATTATTTGCATTTGATTTAAACATTAAGTATGGGTAACCAGACTCAAGCTGAATCAT 184567 Query 191836 TGCAATTTGATTCATTAGTTTCATTGGTGATAAT-TCACATACAAATTTCTTAATATTTG 191894 || |||| | | | | | ||| | |||| || | ||||| | || | Sbjct 184566 AGCGATTTTAATAAGCA-TATCACGTGCACTAATATCTAGTGGCTTCTTCTTCACTTTCG 184508 Query 191895 GATTATTAACTAATTCATCATACATTACATCTAAATCCATCTCATCTAAAGGAATTCCAT 191954 |||| | | ||||||||| |||||| |||| | || || ||||||||| | | |||| Sbjct 184507 GATTGCTCATTAATTCATCGTACATTTCATCAATGTCAATATCATCTAAATGCTTGCCAT 184448 Query 191955 ATTCTTTTTCGACACTATAAGGAGAGAATGTATAGAACTCTTCTTCTCCTGATTCT-AGC 192013 ||||||| | || ||||||| | ||| || ||| ||| | | |||| ||| Sbjct 184447 ATTCTTTATAAACCGTATAAGGCGCGAAAACATGGAAAGGTTCGTTT-----TTCTCAGC 184393 Query 192014 AA-TTGAATAAATTTATCAGGAACAATAATTCCAGTTGAAAGTGTTTTCATACGAATGCT 192072 || | || || ||| ||||| |||||||| |||| || | | ||||| | | Sbjct 184392 AAGCTCAAAGAACTTACTTGGAACGATAATTCCGATTGATAGAGACTGAATACGGCTCTT 184333 Query 192073 ATCGTCAGCATTGAtttttttAGTATTTAGGAAATGAATAATATCCCCATGAAAAATATT 192132 || || ||||| |||||||| |||| ||||| | ||||||||||| ||| ||||| || Sbjct 184332 CTCATCGGCATTTATTTTTTTTGTATCAAGGAATTCAATAATATCCCAATGGAAAATGTT 184273 Query 192133 AAGATAAACAGCTCCTGAGCCTTTGCGTTGACCCATCTGATCAGCATAAGAGAAACTTTG 192192 | ||| || || || | ||||| ||||| || | ||||| ||||| || || | Sbjct 184272 TAAATATACTGCACCGGCACCTTTTCGTTGGCCAAGCTGATTCGCATATGAAAACGAATC 184213 Query 192193 TTCCAATAATTTCATTACAGGAATAACACCTTTAGCGGCATTTTCTTCACCATTTACTGG 192252 ||| | |||||||| ||||| | || || | || || || || ||| || | | | Sbjct 184212 TTCAAGCAATTTCATAACAGGTACTACGCCACTTGCAGCGTTGTCGATACCTTTAATTTG 184153 Query 192253 ATCTCCAAGCATTCTTAATTTAGAAACATTTGTTGAAACCCCTCCACCAATTTTAGAGAG 192312 || || | | || ||||| | ||| | || || || || ||||| | Sbjct 184152 CTCACCGCGTGCGCGTAGCTTAGATAAGTTTAAAGCTACTCCCCCGCCGATTTT----CG 184097 Query 192313 ATACTTTGATTGTCCT-TCAATATGA---CTAATTGAGTTTAGAGTATCATCAACTTCAT 192368 ||| || || | | | ||| | | | || || |||| |||| || | || Sbjct 184096 ATAATTGCATCGCAGTATTAATGTTAAAGCCGATCGAATTTAAGCTATCGTCCATCTCTA 184037 Query 192369 CTAAGAAACAAGATACAAGTTCCCCTCTTCTTGCTT-TACCAGCATTAAGGAAAGTAGGA 192427 ||||||||||| || | ||| ||||||| ||||| | || ||||| | || || || Sbjct 184036 ACAAGAAACAAGACACCATTTCTCCTCTTC-TGCTTCTTCCCGCATTTAAAAAGGTTGGT 183978 Query 192428 GTAGCAGGTTGAACTCTTTGTTCTATCAT--TGCAACAGCGGCTTGAATTGCTTTGTCTA 192485 || || ||||| |||||| || || ||| ||| ||| |||| || | Sbjct 183977 GTCGCTGGTTGGTAGTTTTGTTTTACAATCATGC--TTGCGAATTGTCTTGCCTTCGAAA 183920 Query 192486 GATTCCCATCAAATAGATAGAGAGCAACAATAGCAATTCTATCTTGGTAAGTTTCTAAGT 192545 || || || || | | |||||| || | | ||||| || ||||||||| Sbjct 183919 CATCACCGCGTCCTAAGTATAATGAAACAATTGCTACACGATCTTCATAGCTTTCTAAGT 183860 Query 192546 AATGTTTTTTATCTGTAGTTTTCAAGGCATAAGTACTATAAAATTTGGAGATAGCCATAA 192605 | ||||||| ||| | ||||| || |||||| | || || || || |||||| Sbjct 183859 ATTGTTTTTGATCATTCGTTTTTAACGCATAATCTTTGTAGAACTTAGATGCTGCCATAT 183800 Query 192606 ATGATTGGAA 192615 | |||||||| Sbjct 183799 AAGATTGGAA 183790 Score = 228 bits (252), Expect = 1e-54 Identities = 521/769 (68%), Gaps = 34/769 (4%) Strand=Plus/Minus Query 189798 TAACCATTTCCTTTTACTGAGAAGAAATCATGGTTTTTAGTAGTTGTATTAAGTCCATTT 189857 ||||||||||||||||| |||||||||||||||||||| ||| |||| | |||||| Sbjct 186620 TAACCATTTCCTTTTACAGAGAAGAAATCATGGTTTTTCGTATCTGTACGTAAACCATTT 186561 Query 189858 TCTACAACTGGATTAATATCTTCATCATCAAATAAATGATTAAAACCCAAGTTATCAAAA 189917 || | ||| ||||| ||||| || ||||| | | || || ||||| || || Sbjct 186560 AAAACGATTGGGTTAATTTCTTCTTCTTCAAACTTCGGCTCAAGTCCTAAGTT--CATAA 186503 Query 189918 GCA--TTATTAGCATTATAGCGTAAGAATGCATTTACTTCATCGACTAATCCTATTTTAG 189975 || ||||| ||||| || || | ||| |||||| || || || | || || || Sbjct 186502 GCCCTTTATTCGCATTGTAACGAACGAAACGATTTACATCTTCTACAAGACCGATAGAAG 186443 Query 189976 AATAGATCTCTTCAGTATATTCTAATTCATTTTCATAAAGATCCATTAATAGTTCATTTG 190035 || || ||||| ||||| | | |||| ||||||| || |||||||||| || | || Sbjct 186442 TGTAAATTTCTTCTGTATAGGCCATTTCAATTTCATATAGTTCCATTAATAAATCTTGTG 186383 Query 190036 ---CCCATTGAACTAATTCTTGCTGTTTATTAATATCAAATTTTTCAAATAACTCTTGAG 190092 | ||| ||| || ||||| || | | | || || | | || | | ||| | Sbjct 186382 TTTCTTTTTGCACTTCTTGTTGCTCTTC-TGCAGA--AAGTTCTGCGAAGATTTGTTGTG 186326 Query 190093 CTAATAATCCCATATATTGACCATGAACTGACTCATCACGGATAATTAAGTTAATAATTT 190152 |||| | || | || || |||| |||||||||||| || || ||||| ||||| | Sbjct 186325 CTAAAATACCGACGAATACGCCGTGAATTGACTCATCACGAATTATCAAGTTGATAATCT 186266 Query 190153 CACCACTGGCTACCATTTTGCCTTGTCCAGCTAGGTATAAAGGATAGAAGAATCCAGAAT 190212 ||||||| ||| | ||| ||||| ||||||| ||| | |||||||||||||| || Sbjct 186265 CACCACTTGCTGTTAGTTTTCCTTGACCAGCTAAGTAAAGTGGATAGAAGAATCCGCTAT 186206 Query 190213 AGAATAAGAATGATTCTAACATTACACTGGCTACCATTGCTTTGTATAACATCTCATCAG 190272 |||||||| | |||||| | ||||| ||||||||||| |||||||| | | | Sbjct 186205 AGAATAAGTAACTTTCTAAGAACACACTTGCTACCATTGCCATGTATAACTCTTTTTTTG 186146 Query 190273 TAATAT----CCTTAGTAAA-GATAGCGTCATAATATTTAACAATTTTTTCGGCTTTATA 190327 | | | | ||| |||| || || ||| || || ||| | | ||||| | Sbjct 186145 TTACTTCAGGCTTTAATAAACGA---CG--ATAGTAACTAGTAATAATACCAGCTTTTTT 186091 Query 190328 CTGAAGGTTCTTTTGTTCTTCTCCCCATTTAAAAATCTCATCAAT-TAGACTCATAGAAC 190386 || ||| | || | ||| |||| | |||||| |||||||| | || | | | Sbjct 186090 CTCAAGTAACGGATGATTGTCTACCCAGTCAAAAATATCATCAATCTCTTCTTCTGTAGC 186031 Query 190387 AAAGTGTTGAGAAAATAGCTGAATACGAC--TTAGCATGTACATGTTCCATTGCACCACT 190444 || ||||| |||||| ||| || || || |||||||| | |||||| || || | Sbjct 186030 TAA-TGTTGTGAAAAT--GTGACTATAACTTTTCGCATGTACTTCTTCCATAGCTCCCAT 185974 Query 190445 AAAAGC-AATAACGGCACTCTT---TTGTTCATCTTTAATATGAAGAGAAATTAATGGCA 190500 ||||| |||| |||| || |||| || || || ||||| | | ||||| Sbjct 185973 GAAAGCTAATA----CACTTTTCGCTTGTAAATTTTCAAGATGAACCAGTACAAGTGGCA 185918 Query 190501 TTCCTGCATTTCCTTGTTCAGTATCCAATTTTGTTAAACCAACAAGTAC 190549 ||||| | ||||||| ||||| || |||||||||| | | ||| Sbjct 185917 TTCCTTCGCCACCTTGTTTCGTATCTAAAAGTGTTAAACCACCTAATAC 185869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803151731764400