Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031049.1 Length=161929 Score E Sequences producing significant alignments: (Bits) Value seq7 150 2e-31 seq6 140 3e-28 seq361 136 4e-27 seq8 136 4e-27 seq16 125 7e-24 seq5 118 1e-21 >seq7 Length=350003 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 47297 AGCAACAGCATATACTGCCGACCCAGCTGAGAATGGTGGTACGTATGGTGGACGAGTACT 47356 ||| ||||| |||||||| || ||| ||| |||||| || ||||||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGT---ACATATGGTGGACGCGTTTT 229056 Query 47357 AACAGCTACAGGGTTTGACTTAACAGCGAATCC--ATCAGCTAAAGTTATCGCAGTTGAC 47414 ||| || | ||| ||| ||||| || ||||| || | || |||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAA--TTATCGCAGTTGAC 229114 Query 47415 CCACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCA 47474 || |||||| |||||||| |||||||| |||||||| || ||| ||| || || Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 47475 TCAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCT 47534 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 47535 CAGTCTAGTAACTGGGGTGTACGAACAGTAAAAGTAACAATCTTA 47579 | ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq6 Length=382643 Score = 140 bits (154), Expect = 3e-28 Identities = 207/291 (71%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 47297 AGCAACAGCATATACTGCCGACCCAGCTGAGAATGGTGGTACGTATGGTGGACGAGTACT 47356 ||||||||| || || || || ||| ||| |||||| || || | | |||| Sbjct 338952 AGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAA 339011 Query 47357 AACAGCTACAGGGTTTGACTTAACAGCGAATCCATCAGCTAAAGTTATCGCAGTTGACCC 47416 | ||||| ||| |||||||||| |||||| ||| | || |||||||| || Sbjct 339012 ATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCC 339071 Query 47417 ACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATC 47476 | | || ||||||||||| || ||||| || ||||| |||||| |||||| || Sbjct 339072 AAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGG 339131 Query 47477 AGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCA 47536 ||||||||||||||||| ||||| ||| |||||| || |||||||| |||| | Sbjct 339132 TGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTC 339191 Query 47537 GTCTAGTAACTGGGG-TGTACGAACAGTAAAAGTAACAATCTTAAACTAGT 47586 || |||| |||||| ||| |||||| | ||| | | | |||||||||| Sbjct 339192 ATCAAGTAGCTGGGGACGTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq361 Length=20807 Score = 136 bits (150), Expect = 4e-27 Identities = 165/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 47296 AAGCAACAGCATATACTGCCGACCCAGCTGAGAATGGTGGTACGTATGGTGGACGAGTAC 47355 |||| || |||||||| || || || |||||||||| |||||||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGGTT---CGTATGGTGGTCGTGTAT 1124 Query 47356 TAACAGCTACAGGGTTTGACTTAACAGCGAATCCATCAGCTAAAGTTATCGCAGTTGACC 47415 |||| || | ||| ||| |||||||| |||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 47416 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47475 | ||||||||| | || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 47476 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47519 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq8 Length=318055 Score = 136 bits (150), Expect = 4e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 47297 AGCAACAGCATATACTGCCGACCC-AGCTGAGAATGGTGGTACGTATGGTGGACGAGTAC 47355 ||| ||||||||||| || |||| ||| || || ||||| || ||||| || || ||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGGCCGTGTAT 28478 Query 47356 TAACAGCTACAGGGTTTGACTTAACAGCGAATCCATCAGCTAAAGTTATCGCAGTTGACC 47415 |||| || | || ||| ||||| ||||||||| ||| | ||||| ||||||| Sbjct 28477 TAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 47416 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 47475 | |||||| |||||||| |||||||| |||||||| |||||| ||| || || Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 47476 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 47519 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 >seq16 Length=199848 Score = 125 bits (138), Expect = 7e-24 Identities = 220/316 (70%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 47274 CAAGGT--AAAACAATCGTA-GTGAAAGCAACAGCATATACTGCCGACCCAGCTGAGAAT 47330 |||||| |||| ||| || || | |||||| || ||||| || |||||| |||| || Sbjct 160169 CAAGGTGGAAAAGAATTTTACGTAACAGCAACCGCTTATACAGCTGACCCATCTGAAAAC 160228 Query 47331 GGTGGTACGTATGGTGGACGAGTACTAAC--AGCTACAGGGTTTGACTTAACAGCGAATC 47388 || || |||| | ||| | | || || || | | ||||| || |||| Sbjct 160229 GGCTATAAACCGGGTGAAACTGTAAAATCTAAGTTA--GGACATAATTTAACTGCAAATC 160286 Query 47389 CATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAGGCTCTAAAGTTCATG 47448 || ||| | || || || || ||| || || |||||||| |||| || ||| Sbjct 160287 CAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACTGTATATG 160346 Query 47449 TAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTATCAAAGGAAATCGAA 47508 |||||||||| |||||||||||||| |||||||||| | || || ||||| || | Sbjct 160347 TAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGGCATATCA 160406 Query 47509 TCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGGTGTACGAACAGTAAAAG 47568 | ||| |||||||||| | | |||| ||| | |||||||| | ||||||| |||| Sbjct 160407 TTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGAAGAACAGTTAAAG 160466 Query 47569 TAACAATCTTAAACTA 47584 | | ||| |||||||| Sbjct 160467 TTAAAATTTTAAACTA 160482 >seq5 Length=406804 Score = 118 bits (130), Expect = 1e-21 Identities = 286/426 (67%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 33577 TTTATCTTGATGGTAAAAATAAATATTACAATACATGGAATAAGACATCTATAAAAGATG 33636 ||||| | || ||||||||||||||||| || || ||||| || ||| ||||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 33637 GTGTCGTTCTCAACTGGACAGGTTCTCATAAAGGTGTTGGTATCCGATTCTACTCTGGAG 33696 || |||| ||||| | | |||||||| || || || ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 33697 GAACTGACCATGAGATTTCATTCGTAGATACATC--AAACATCAAACTAGTAGGTTTAAG 33754 ||| || |||| ||||| || || | | || ||| || ||| | ||||| | | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGTTAA--CTTCGAAAATATTAAAGTTGTAGGAATG-G 286362 Query 33755 AAAAGGTATTGAACT-AGAAGCTAAAGCTCC-AGCTACCGGAATGGCTTGGGTGAACGCA 33812 ||| | | |||| | || ||| ||| || ||| |||||| |||||| | || || Sbjct 286363 AAACTGGACTGAAATTAGTAGCGAAAAAACCGAGC-ACCGGACAAGCTTGGATAAATGCC 286421 Query 33813 AATCGTTTCGATAAGATATCAATTGAAGACTGTGTAGAAATGATTACGATTGACAGCAAT 33872 |||||||| || | || | |||||||||||| | |||||| || || || | Sbjct 286422 AATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAA 286481 Query 33873 GAGACAATCCCGAACGAATGTAGTGGTAATACTTTCTCCAATCTTCAACTACAGCCATCT 33932 | || | || || ||| |||||| ||| || | || |||||| ||||||| || Sbjct 286482 GTAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCA 286541 Query 33933 ACCGCAACAACAAAAGTTTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTT 33992 | ||||| || || || | |||||||| || ||||| ||| |||| ||| | Sbjct 286542 AATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTG 286601 Query 33993 TGGGAT 33998 |||||| Sbjct 286602 TGGGAT 286607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518009540575800