Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031055.1 Length=43773 Score E Sequences producing significant alignments: (Bits) Value seq4 399 6e-107 seq7 188 2e-43 seq3 141 3e-29 >seq4 Length=425142 Score = 399 bits (442), Expect = 6e-107 Identities = 342/426 (80%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 40182 AAGGAGTGAGAGGATTGAATAATTTaaaaaagaagaaattgaaaaaaGCAATTTCTCGTC 40241 |||||||||| || || ||| |||| || |||||| | |||||||| ||| |||||| Sbjct 180839 AAGGAGTGAGGAGAGTGGCAAATATAAAGAAAAAGAAACTAAAAAAAGCGATTGCTCGTC 180898 Query 40242 GTACAAAGGCTATACAAAAATATGAGAAAGAAAGATTAGATAAAGCATGGAGGAACCTTT 40301 |||||||||| ||||||||| ||||||||||| ||||||||||| ||||| ||||| | Sbjct 180899 GTACAAAGGCAATACAAAAAGCAGAGAAAGAAAGGTTAGATAAAGCTTGGAGAAACCTGT 180958 Query 40302 TCATGCAGACAAGTATGACGAAATAAATATAGTCCGGCTAGAAAACTAGAGGACACCAAT 40361 | || ||| | | || | |||||||||| |||||||||||||||||||||||||||||| Sbjct 180959 TTATACAGCCTAACATTATGAAATAAATACAGTCCGGCTAGAAAACTAGAGGACACCAAT 181018 Query 40362 TCATTAAAGCGGCAATTAAGGCTGTTTTAGGAATAGGTGTCCTTTTTATTTTGAAAAGGG 40421 | ||| | | | |||||| ||||||||| ||| |||||||| |||||||| ||||||| Sbjct 181019 T-TTTAGAACAGTAATTAA-GCTGTTTTAAGAAATGGTGTCCTCTTTATTTTTAAAAGGG 181076 Query 40422 AGATGGGGAAATGAAGGCACTAAGAGATCAATTACGTGAATGGAAAAAGCAATCCAAGCA 40481 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 181077 AGATGGGGAAATGAAGGCACTAAAAGATCAATTACATGAATGGAAAAAGCAATCCAAGCA 181136 Query 40482 AGGAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAAGTACTCGTGACATTGAAGA 40541 |||||||| ||||||||||||||| ||||| || Sbjct 181137 AGGAAAGA-------AGAAAAAACAAAAAGAGAAATATTAAGTACTCGTGAAATTGAGGA 181189 Query 40542 TTTAATGGGGATTCGTGGTCCGCGTTATGAACGTAGACGCGGAGCTTTAAGACAAAAGTA 40601 |||||||||||| | | | || |||||||||| ||||||||||| |||||||||||| | Sbjct 181190 TTTAATGGGGATGCATAGACCTTGTTATGAACGAAGACGCGGAGCATTAAGACAAAAG-A 181248 Query 40602 AAATTA 40607 || ||| Sbjct 181249 AATTTA 181254 Score = 127 bits (140), Expect = 6e-25 Identities = 123/154 (80%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 304 GCTTTTGCTCTTCTTCCAGTTACTTAATATTGCTGCAGC-AGATGAATATAACGACATTA 362 ||||||||||||||||||||||||||||| | |||| | || || | | | |||| Sbjct 184003 GCTTTTGCTCTTCTTCCAGTTACTTAATAAAG-TGCAAATAAATTGATGCAGCAATATTA 184061 Query 363 GGTAATTGGGAGAAGAATAAAACTTCATTTACCGTAATTGAAGTGTAAACAAATAATTAA 422 ||| ||||| ||||| | |||||||||||||||||||||||| | ||| |||||||| | Sbjct 184062 GGTGATTGGAAGAAGGAGAAAACTTCATTTACCGTAATTGAAATACAAATAAATAATTGA 184121 Query 423 TCATAAAGCATCCAT-TCGGGTGCTTTTTTATTT 455 | | ||||||||| |||||||||| || ||| Sbjct 184122 TATGAGAGCATCCATAACGGGTGCTTTCTTCTTT 184155 Score = 89.7 bits (98), Expect = 1e-13 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 39512 AAAATAAAAGAGCGGCTAGCAAAAACTGACCGCTCCGTTT-TGACAAAAGATTCCGGGCA 39570 ||||||||||| | ||||||||||||| || |||| ||| | ||||| |||||||| Sbjct 179976 AAAATAAAAGAACAGCTAGCAAAAACTAACTGCTCTTTTTCCAAAAAAAGGTTCCGGGCT 180035 Query 39571 GAAATCACTGCTAAGATAACTGCTTATGGTTAGTATGGTACAAAATCACGATTAGTAT-- 39628 | || ||||| ||||| | ||||||| |||||| |||||||||| || || ||| Sbjct 180036 GCAAACACTGTTAAGAAGGCAGCTTATGAGTAGTAT-GTACAAAATCGTGAATATTATAA 180094 Query 39629 TCAAAAATAAAGAGC 39643 | ||| ||||||| Sbjct 180095 GGATAAAAAAAGAGC 180109 Score = 84.2 bits (92), Expect = 6e-12 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 38555 TATCATGAATTTTTTGGTAAAAATACTGGTAAATGTGTCCAA-ATGGATAGGAGCATTAT 38613 || ||||||| || ||||||||||| ||||||| | ||||| ||| |||| ||||| Sbjct 178562 TAACATGAATGTTGCGGTAAAAATACCGGTAAATTTATCCAATATGTTTAGGGCTATTAT 178621 Query 38614 TTTGAACAAAAACGCTATTTGAGTAGAAAAGGA 38646 || ||| |||||||||||| | |||||||||| Sbjct 178622 TTCTAACCAAAACGCTATTTTATTAGAAAAGGA 178654 >seq7 Length=350003 Score = 188 bits (208), Expect = 2e-43 Identities = 222/296 (75%), Gaps = 11/296 (4%) Strand=Plus/Plus Query 24976 ACAGGAAAGG--TGGAGATTATAGTGAATAAATTTAATAAAGTTGTTACGTATGAATTTG 25033 ||| ||| || |||| |||||||||||||||| ||| ||||| ||||| |||||||||| Sbjct 349309 ACAAGAAGGGGTTGGA-ATTATAGTGAATAAATATAACAAAGTAGTTACTTATGAATTTG 349367 Query 25034 GGACAGCGTTAGTACCTGAGATGTTAGGAATGATGGATGCCCTAGGTTATGAATCTCGTA 25093 | | ||||| ||||| ||| | |||||||||| || || ||| ||| | Sbjct 349368 GTGTAAATTTAGTTCCTGACATGATTCAAATGATGGATAAGCTTGGATATACTTCTAAAA 349427 Query 25094 TTATCTCATATGGAGATAAACAAGGATTAGTTAGATTTGAAACAGCATATCGCCAAGGTA 25153 | || || ||||||||| ||||| | || || ||||||| ||||| ||||| | Sbjct 349428 TAATATCTCGTGGAGATAACCAAGGGCTTGTGTATTTCGAAACAGATTATCGTCAAGGGA 349487 Query 25154 ACGAGCTGGACAAGGCTACAGCGTGGTTAGATGCTAAAGGACTTAAATACTTCTATACAA 25213 | || |||||||| || || || ||||||||| | |||||| ||||||| || ||||||| Sbjct 349488 ATGAACTGGACAAAGCAACTGCTTGGTTAGATACGAAAGGAATTAAATATTTTTATACAA 349547 Query 25214 AAGAATAGTTTGATTAACAAAATAAGAGCCGTCCTGTTGGACGGCtttttttATTT 25269 |||| ||||||| | || |||| ||||||| ||| ||||| |||||||||| Sbjct 349548 AAGAGTAGTTTGCTAAATAAAA----AGCCGTCATGT--GACGG--TTTTTTATTT 349595 Score = 93.3 bits (102), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 10/106 (9%) Strand=Plus/Plus Query 39631 AAAAATAAA-GAGCAGCTAGCAAAAGCTAACTGCTC-------AGGT--AATGGAGAAAG 39680 ||||||||| ||||||||||||||||| |||||||| ||| |||||||||| Sbjct 297614 AAAAATAAAAGAGCAGCTAGCAAAAGCCAACTGCTCCTCTCTCAGGAGGAATGGAGAAAT 297673 Query 39681 ATTACCATGTCATCTATAGTATTGACGGAATATTGAGTTTTATTCA 39726 | | ||| | ||||||||||||||||||| || |||||||| ||| Sbjct 297674 ACAATCATATTATCTATAGTATTGACGGAACATAGAGTTTTAATCA 297719 >seq3 Length=500241 Score = 141 bits (156), Expect = 3e-29 Identities = 317/470 (67%), Gaps = 21/470 (4%) Strand=Plus/Plus Query 24443 AATAGAAAAGGAGATGTAAAGTAATGGAAATTAAACAAATGTTAGTACCTGTAAGTCGTT 24502 |||| |||||||||| |||||||||||||| | ||| ||||| | |||| | Sbjct 203 AATAAAAAAGGAGATAATCAGTAATGGAAATTAGAAAAAAATTAGTGGATCCAAGTAAAT 262 Query 24503 ACTCCGTCTTA--TGCCCGTATGAAATGAATCCAACAGAA---ATCACATTTCATAACAC 24557 | || | | || || || ||||| || ||||| |||||| | ||||| || Sbjct 263 ATG--GTATAAAGTGTCCCAATACAATGA---CACCAGAATTCATCACAGTACATAATAC 317 Query 24558 GTACAATGACGCACCGGCTATAAATGAG----CGTAATAATGTCGCTAACAATAGCACCG 24613 ||||||||| ||| | || ||||||| |||| || | | || |||| | | Sbjct 318 GTACAATGATGCATCAGCAGAAAATGAGATATCGTA-TATGATTGGGAATAATAATTCAG 376 Query 24614 GAACATCATTTCATATCGCTGTGGATGATAAGGAAGCTATTCAGTTAATTCCTTTTAACA 24673 || |||||| | || || ||||| || ||||| | || |||| ||| | Sbjct 377 TG---TCGTTTCATGTTGCAGTAGATGACAAAGAAGCAGTACAAGGTATTCTGTTTGATC 433 Query 24674 GAAACGCATGGCACGCTGGAGATGGTACTAATGGAAGAGGGAATCGTCATAGTATTGGGG 24733 | || || ||||| || || ||||||| | |||| || |||||| | ||| || | Sbjct 434 GTAATGCTTGGCATGCAGGTGATGGTA---ACGGAAATGGTAATCGTAAATCTATCGGAG 490 Query 24734 TTGAAATTTGTTATTCACAATCAGGCGGAGCAAGATATCGCAAAGCTGAATTGAATGCAG 24793 | |||||||| ||||| | | || || | |||||| ||| || || ||||||| Sbjct 491 TGGAAATTTGCTATTCTCTAAGCGGTGGGGATAGATATTACAAGGCGGAGGATAATGCAG 550 Query 24794 TTGAAGTGATTGCTCAATTAATGATTCAATTTGATATACCGATTAGTAAAGTTAAGACTC 24853 || |||||||| ||||||| ||||| |||||||||||||||| || || | Sbjct 551 CAATTGTTATTGCTCAGTTAATGAAACAATTCAATATACCGATTAGTAATGTACGTACAC 610 Query 24854 ATCAAGAGAGAAATGGGAAGTACTGTCCACATCGAATGTTAGATGAAGGA 24903 || || | | | ||| ||| | || |||||||||||| | ||||||||| Sbjct 611 ATAAATCGTGGAGTGGAAAGCATTGCCCACATCGAATGCTCGATGAAGGA 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139942950791150