Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031056.1 Length=157501 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq8 109 6e-19 seq361 105 7e-18 seq4 105 7e-18 seq5 98.7 1e-15 seq6 84.2 2e-11 >seq7 Length=350003 Score = 114 bits (126), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 126945 ACGTCAATACGATTACCCTTAATTGCCCCTCCAACATCTAGGGCAGTTGCTTCTCCATAT 127004 || |||||||||||||| |||||||| | |||| ||| || | ||||||||||| Sbjct 229215 ACATCAATACGATTACCTTTAATTGCACTTCCAGTATCACCAGCGATCGCTTCTCCATAG 229156 Query 127005 CCTTCGACATGTACTTTCGTTCCTAGTGGAATTACTCGTGGGTCTACTGCGATGATTCGA 127064 ||||| || |||||| | ||||| ||| |||||| ||||| |||||||| |||| Sbjct 229155 CCTTCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACTGCGATAATTCTC 229096 Query 127065 GCGTTAGGGTTTGCACTCAGATTGAATCCTGTAGCAGTTAATACTTGTCCACCGTATGTA 127124 || || ||||| | | || || | |||||||| || ||||||| ||||| Sbjct 229095 ATATTCGGATTTGCCGTTAAATCATGCCCCATCGCAGTTAAAACGCGTCCACCATATGT- 229037 Query 127125 CCACCATTCTCACTTGGATGTGGTGTGTATGCAGTTGCTTCCACTGT 127171 |||||| |||||||||| | || || || || ||| | || || Sbjct 229036 --ACCATTTTCACTTGGATCAGCAGTATACGCTGTCGCTACTACCGT 228992 >seq8 Length=318055 Score = 109 bits (120), Expect = 6e-19 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 126948 TCAATACGATTACCCTTAATTGCCCCTCCAACATCTAGGGCAGTTGCTTCTCCATATCCT 127007 |||||||| ||||| |||||||| || ||| |||| || | |||||||| || ||| Sbjct 28321 TCAATACGGTTACCTTTAATTGCACCACCAGTATCTCCAGCGATAGCTTCTCCGTAACCT 28380 Query 127008 TCGACATGTACTTTCGTTCCTAGTGGAATTACTCGTGGGTCTACTGCGATGATTCGAGCG 127067 || || |||||| | ||||| ||| |||||| ||||| || ||||| ||| Sbjct 28381 TCTACCCATACTTTAGATCCTAATGGGATTACTTTCGGGTCAACAGCGATCATTTTCATA 28440 Query 127068 TTAGGGTTTGCACTCAGAT--TGAATCCTGTAGCAGTTAATACTTGTCCACCGTATGTAC 127125 || || || ||| | | || ||| || | ||||||||||| | || || ||||| | Sbjct 28441 TTTGGATTCGCAGTTAAATCATGA--CCCATTGCAGTTAATACACGGCCGCCATATGTGC 28498 Query 127126 CACCATTCTCACTTGGATGTGGTGTGTATGCAGTTGCTTCCACTGT 127171 |||| || || || || || | ||| ||||| || ||| | ||||| Sbjct 28499 CACCGTTTTCGCTCGGGTGAGCTGTATATGCTGTAGCTACAACTGT 28544 >seq361 Length=20807 Score = 105 bits (116), Expect = 7e-18 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 126941 TAGTACGTCAATACGATTACCCTTAATTGCCCCTCCAACATCTAGGGCAGTTGCTTCTCC 127000 || ||| ||||||||||| || ||||| || || || ||| ||| | |||||||| Sbjct 1288 TAATACATCAATACGATTTCCTTTAATCGCACCACCGGTGTCTCCAGCAATCGCTTCTCC 1229 Query 127001 ATATCCTTCGACATGTACTTTCGTTCCTAGTGGAATTACTCGTGGGTCTACTGCGATGAT 127060 ||||||||| || |||||| | ||| || ||||||||| || || || || || | Sbjct 1228 ATATCCTTCTACCCATACTTTTGATCCAAGCGGAATTACTTTCGGATCAACAGCAATTAC 1169 Query 127061 TCGAGCGTTAGGGTTTGCACTCAGATTGAATCCTGTAGCAGTTAATACTTGTCCACCGTA 127120 | || || ||||| | | || || | ||||||||||| | ||||| || Sbjct 1168 TTTCATATTTGGATTTGCTGTTAAATCATGCCCCATTGCAGTTAATACACGACCACCATA 1109 Query 127121 TGTACCACCATTCTCACTTGGATGTGGTGTGTATGCAGTTGCTTCCACTGTGAT 127174 | |||||||||||| |||| || ||| ||||| || ||||| ||||| || Sbjct 1108 CG---AACCATTCTCACTCGGATCTGCTGTATATGCCGTCGCTTCTACTGTAAT 1058 >seq4 Length=425142 Score = 105 bits (116), Expect = 7e-18 Identities = 280/416 (67%), Gaps = 29/416 (7%) Strand=Plus/Plus Query 2994 TAGGAGCTATATACGGAGCACAGTGGCGTGATTGGAACA--ACAGA-GGTA------TTG 3044 |||||| | ||||| ||||||||||| |||||| | |||| ||| ||| Sbjct 259664 TAGGAGACGTTTACGGTAAACAGTGGCGTGCTTGGAAAACGACAGCTGGTGAGACACTTG 259723 Query 3045 ACCAGTTAAAGAATGTGATTGAAGAGATTAAAAAGAACCCTGACTCAAGACGTCTACTTG 3104 | || ||||| |||| |||||| ||||||||| | || |||||| | ||| || | | Sbjct 259724 ATCAATTAAAAGATGTAATTGAAATGATTAAAAAAACACCAGACTCACGTCGTTTAATCG 259783 Query 3105 TATCAGCGTGGAATCCTTCAGAACTAGCAATTAGTGTATTACCACCATGCCATTACTCGT 3164 | || || |||||||| ||| || ||| || | ||||| || || ||| || | | Sbjct 259784 TTTCTGCTTGGAATCCAGAAGATGTACCAAGTATGGCCTTACCGCCTTGTCAT-ACGC-T 259841 Query 3165 AT--CAGTTATATGTAGTAGATGGTAAGTTAAGCTTAATGTTCA---ATATGAGATCGAA 3219 || ||||| ||||||| |||||| ||| | || ||| || |||| | | ||| Sbjct 259842 ATTCCAGTTTTATGTAGCAGATGGAAAGCT----TTCTTGT-CAGTTATATCAAA--GAA 259894 Query 3220 ----TGATATTTTCCTAGGTTTACCCTTTAACATTGCTAGTTATGCTCTATTAGTATTTA 3275 ||| || ||||| || | || ||||||||||| ||||| | ||| || | | Sbjct 259895 GTGGTGACATATTCCTTGGAATTCCATTTAACATTGCAAGTTACTCACTACTAACACATT 259954 Query 3276 TTATTGCA-AAGATGACGGGACTTGAAGTAGGAGAGCTTATCTACTCAGCAGGAGATGCG 3334 | |||||| | || | ||||||||||| ||||| || | | || || ||||| Sbjct 259955 TAATTGCACATGAATGC-GGACTTGAAGTGGGAGAATTTGTTCATACAATTGGTGATGCA 260013 Query 3335 CATGTGTATCTAAACCATATCGAGCAGATTAAAGAGCAACTACAACGTGAGCCACG 3390 || | ||| ||| ||| | || || | || ||||| | |||||| ||||| Sbjct 260014 CACATTTATACAAATCATTTTGAACAAGTAGAAAAGCAATTGGCACGTGAACCACG 260069 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 151803 GCTTATATCCGTGGATATAATGTAAACCTTCGTAGCGGCCCTGGAACAGGATACAGTGTT 151862 |||||||| ||||| ||| |||||||| | || || || |||| | ||||| Sbjct 212811 GCTTATATTGATGGATTTAACGTAAACCTAAGAAGTGGACCATCAACAAATCATGGTGTT 212870 Query 151863 ATCCGTCAGTTAAGCAAAGGTGAGTCTTATGTAGTTTGGGCTAAACAAAATGGATGGTTA 151922 |||||||| |||| ||||| || | ||| ||| |||| |||||| | |||||| Sbjct 212871 ATCCGTCAATTAAATAAAGGAGAAGCATATCAAGTATGGGGAAAACAAGGGGATTGGTTA 212930 Query 151923 AACCTTGGTGGAAACCAGTGGGTTTACAACGATCCATCATACATCAA 151969 || |||||||| ||||| ||| |||| ||| | ||||| ||||| || Sbjct 212931 AATCTTGGTGGTAACCAATGGATTTATAACAACCCATCTTACATTAA 212977 >seq5 Length=406804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 151802 TGCTTATATCCGTGGATATAATGTAAACCTTCGTAGCGGCCCTGGAACAGGATACAGTGT 151861 ||||||||| || ||||||||| | || | || ||||| || ||||| | || Sbjct 271788 TGCTTATATTAACGGTAGTAATGTAAATTTACGAAAAGGACCTGGTACTGGATATGGCGT 271847 Query 151862 TATCCGTCAGTTAAGCAAAGGTGAGTCTTATGTAGT-TTGGGCTAAACAAAATGGATGGT 151920 ||| ||||| ||| | ||||| ||||| || ||| || || || |||| ||| |||| Sbjct 271848 TATTCGTCAATTAGGGAAAGGAGAGTCCTACAAAGTATTTGGACAATCAAA-TGGCTGGT 271906 Query 151921 TAAACCTTGGTGGAAACCAGTGGGTTTACAACGATCCATCATACAT 151966 |||| || ||||| | |||||| |||| |||||||||||||| || Sbjct 271907 TAAATCTCGGTGGCGATCAGTGGATTTATAACGATCCATCATATAT 271952 >seq6 Length=382643 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 126889 TAACTTTCACTTGTTTTCGACCCCAAGCATTTGCTTGTGAATCTGTGGGTAATAGTACGT 126948 ||| | |||||| ||| || ||||| || |||||| ||||| || || || || | Sbjct 157060 TAATTCTCACTTTTTTACGTCCCCATTCACGTGCTTGCTTTTCTGTAGGAAACAGAACAT 157119 Query 126949 CAATACGATTACCCTTAATTGCCCCTCCAACATCTAGGGCAGTTGCTTCTCCATATCCTT 127008 |||| ||| || ||||| ||||| || |||| ||| |||| || || ||||||| Sbjct 157120 CAATTTTATTGCCTTTAATAGCCCCACCTGTATCTCCAGCAATTGCATCACCGTATCCTT 157179 Query 127009 CGACATGTACTTTCGTTCCTAGTGGAATTACTCGTGGGTCTACTGCGAT 127057 | || ||||||||||||||| ||| ||| || || ||||| || Sbjct 157180 CAACCCAAACTTTCGTTCCTAGTTTAATAACTTTAGGATCAACTGCAAT 157228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503840904994200