Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031070.1 Length=162375 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq361 132 5e-26 seq6 131 2e-25 seq16 129 6e-25 seq8 122 9e-23 seq5 87.8 2e-12 >seq7 Length=350003 Score = 147 bits (162), Expect = 2e-30 Identities = 205/285 (72%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 47969 AGCAACAGCATATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTACT 48028 ||| ||||| |||||||| || ||| || ||||| ||| || |||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTTT 229056 Query 48029 AACAGCTACAGGGTTTGACTTAACAGCAAATCC--ATCAGCTAAAGTTATCGCAGTTGAC 48086 ||| || | ||| ||| ||||| |||||||| || | || |||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAA--TTATCGCAGTTGAC 229114 Query 48087 CCACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCA 48146 || |||||| |||||||| |||||||| |||||||| || ||| ||| || || Sbjct 229115 CCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCT 229174 Query 48147 TCAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCT 48206 |||||||| | || || ||||| ||||| || ||||| |||||| ||| ||| | Sbjct 229175 GGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGT 229234 Query 48207 CAGTCTAGTAACTGGGGTGTACGAACAGTAAAAGTAACAATCTTA 48251 | ||| || ||||| || ||| || ||||| | ||| ||| Sbjct 229235 AAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq361 Length=20807 Score = 132 bits (146), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 47968 AAGCAACAGCATATACTGCCGACCCAGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 48027 |||| || |||||||| || || || |||||||| | |||| ||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGGTGGTCGTGTAT 1124 Query 48028 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 48087 |||| || | ||| ||| ||||||||||||||| ||||| || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 48088 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 48147 | ||||||||| | || || ||||| ||||||||||| ||| ||| ||||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 48148 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 48191 ||| || ||||| || || ||||||||||| || ||||||||| Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTA 1288 >seq6 Length=382643 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 48046 ACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAG 48105 |||||||||| |||||| ||| | || |||||||| ||| | || |||||||||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 48106 GCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTA 48165 | || ||||| || ||||| |||||| |||||| || |||||||||||||||| Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 48166 TCAAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGG-T 48224 | ||||| ||| |||||| || |||||||| |||| | || |||| |||||| Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGTTCATCAAGTAGCTGGGGAC 339208 Query 48225 GTACGAACAGTAAAAGTAACAATCTTAAACTAGT 48258 ||| |||||| | ||| | | | |||||||||| Sbjct 339209 GTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 >seq16 Length=199848 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48048 TTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACCCACGAGTAATTCCATTAGGC 48107 ||||| ||||||||| ||| | || || || || ||| || || |||||||| Sbjct 160274 TTAACTGCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGT 160333 Query 48108 TCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCATCAGATACTGGTGGAGCTATC 48167 |||| || ||||||||||||| |||||||||||||| |||||||||| | || || Sbjct 160334 TCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATA 160393 Query 48168 AAAGGAAATCGAATCGATGTATTAATGCCTTCTAAATCTCAGTCTAGTAACTGGGGTGTA 48227 ||||| || || ||| |||||||||| | | |||| ||| | |||||||| | Sbjct 160394 AAAGGGCATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGA 160453 Query 48228 CGAACAGTAAAAGTAACAATCTTAAACTA 48256 ||||||| ||||| | ||| |||||||| Sbjct 160454 AGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq8 Length=318055 Score = 122 bits (134), Expect = 9e-23 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 47969 AGCAACAGCATATACTGCCGACCC-AGCAGAGAATGGCGGTACGTACGGTGGACGAGTAC 48027 ||| ||||||||||| || |||| ||| || || || || || || || || || ||| Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGGCCGTGTAT 28478 Query 48028 TAACAGCTACAGGGTTTGACTTAACAGCAAATCCATCAGCTAAAGTTATCGCAGTTGACC 48087 |||| || | || ||| ||||| || |||||| ||| | ||||| ||||||| Sbjct 28477 TAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACC 28418 Query 48088 CACGAGTAATTCCATTAGGCTCTAAAGTTCATGTAGAAGGATACGGAACAGCAATTGCAT 48147 | |||||| |||||||| |||||||| |||||||| |||||| ||| || || Sbjct 28417 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTG 28358 Query 48148 CAGATACTGGTGGAGCTATCAAAGGAAATCGAATCGATGTATTA 48191 |||||||||||| || || ||||| || || || ||| | ||| Sbjct 28357 GAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTA 28314 >seq5 Length=406804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 277/425 (65%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 33944 TTTATCTCGATGGTAAGAATAAATATTACAACACATGGAATAAGACAGCTATAAAAGACG 34003 ||||| | || ||||| ||||||||||| ||||| ||||| || ||| |||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 34004 GTGTCGTTCTCAACTGGACAGGTTCACATAAAGGTGTGGGTATCCGTTTCTACTCTGGAG 34063 || |||| ||||| | | |||||||| || || ||| ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 34064 GAACTGACCACGAGATTTCATTCGTAGATACATCG--AATATCAAACTAGTAGGTTTAAG 34121 ||| || | || ||||| || || || ||| ||||| ||| | ||||| | | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGT--TAACTTCGAAAATATTAAAGTTGTAGGAAT-GG 286362 Query 34122 AAAAGGTATTG-AACTAGAAGCTAAAGCTCCAACTACTGGAATGGCTTGGGTGAATGCAA 34180 ||| | | || || ||| ||| ||| || | || ||| |||||| | ||||| | Sbjct 286363 AAACTGGACTGAAATTAGTAGCGAAAAAACCGAGCACCGGACAAGCTTGGATAAATGCCA 286422 Query 34181 ATCGTTTCGATAAGATATCAATTGAGGATTGCGTAGAGATGATTACGATTGACAGCAGTG 34240 ||||||| || | || | || || || ||| | |||||| || || || | Sbjct 286423 ATCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAAG 286482 Query 34241 AGACAATCCCGAACGAATGTAGTGGTAATACTTTCTCCAATCTCCAACTACAACCATCTA 34300 || | || || ||| |||||| ||| || | || || ||| |||| || || | Sbjct 286483 TAACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCAA 286542 Query 34301 CTGCAACTACAAAGGTCTTAAAAGTAAGTGGACAGCATAACCGATTCGATGGTATGCTTT 34360 | ||| | || | || | |||||||| || ||||| ||| |||| ||| | | Sbjct 286543 ATAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTGT 286602 Query 34361 GGGAT 34365 ||||| Sbjct 286603 GGGAT 286607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519436643437000