Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031100.1 Length=164443 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 seq16 152 5e-32 seq7 152 5e-32 seq8 143 3e-29 seq361 127 2e-24 >seq6 Length=382643 Score = 154 bits (170), Expect = 2e-32 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 45537 GTTCTAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGATGGCGTA 45596 ||| |||| ||||| ||||||||||| ||| || ||||| || | | | | | Sbjct 338947 GTTGTAGCAACAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAA 339006 Query 45597 GTTAAAACAGCGATGGGACATAACTTATCTGCAAACCCTAGCATGAAAATGGTTGCAGTT 45656 || ||| |||| | || || |||||| | || || || | ||||||| | |||||||| Sbjct 339007 GTAAAATCAGCTTTAGGCCACAACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTT 339066 Query 45657 GACCCTAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATC 45716 || || || || |||||| | ||||| | | || ||||| || || | ||||||| Sbjct 339067 GATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATC 339126 Query 45717 GCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATTGATGCCATCTAAA 45776 || || |||||||||||||| || ||||||||| |||||| || || |||||| |||| Sbjct 339127 GCTGGTGATACTGGTGGAGCTATTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAA 339186 Query 45777 TCTCAATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAATCCTAAACTA 45829 | ||| || ||||||| | |||||||| ||||| | | ||||||| Sbjct 339187 GGTTCATCAAGTAGCTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTA 339239 >seq16 Length=199848 Score = 152 bits (168), Expect = 5e-32 Identities = 230/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 45513 AAACCA---CAAGGT--AAAACAATTACA-GTTCTAGCTACAGCGTACACAGCAGACCCA 45566 |||||| |||||| |||| |||| | || ||| || || || ||||| |||||| Sbjct 160160 AAACCAACTCAAGGTGGAAAAGAATTTTACGTAACAGCAACCGCTTATACAGCTGACCCA 160219 Query 45567 GCAGAGAATGGCGGTACATACGATGGCGTAGTTAAAACAGCGATGGGACATAACTTATCT 45626 | || || ||| || | | || || ||| | | | |||||||| ||| || Sbjct 160220 TCTGAAAACGGCTATAAACCGGGTGAAACTGTAAAATCTAAGTTAGGACATAATTTAACT 160279 Query 45627 GCAAACCCTAGCATGAAAATGGTTGCAGTTGACCCTAGAGTAATTCCACTTGGTTCTCGT 45686 ||||| || | ||||||| | |||| || || || || || ||| | |||||| | Sbjct 160280 GCAAATCCAAACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGGTTCTACT 160339 Query 45687 ATCTATGTAGAAGGATATGGTGAAGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGT 45746 | ||||||||||||||||| |||||| || |||||||||||| | ||||| ||||| Sbjct 160340 GTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAATAAAAGGG 160399 Query 45747 AATCGAATCGATGTATTGATGCCATCTAAATCTCAATCTAGCGACTGGGGAAGAAAAACA 45806 || || ||| |||| |||||| | | ||||| ||| |||||||| |||| |||| Sbjct 160400 CATATCATTGATCTATTAATGCCAAATTCAGCTCAAGCTAATGACTGGGGTAGAAGAACA 160459 Query 45807 GTACAAGTTACAATCCTAAACTAA 45830 || |||||| ||| |||||||| Sbjct 160460 GTTAAAGTTAAAATTTTAAACTAA 160483 >seq7 Length=350003 Score = 152 bits (168), Expect = 5e-32 Identities = 202/280 (72%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 45541 TAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGATGGCGTAGTTA 45600 |||| |||||||| || || || ||| || ||||| |||||| | ||| ||| Sbjct 228999 TAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGG---TACATATGGTGGACGCGTTT 229055 Query 45601 AAACAGCGATGGGACATAACTTATCTGCAAACCCTAGCATGAAAATGGTTGCAGTTGACC 45660 ||| |||||||| ||| | ||| | ||||| || | |||| ||| | |||||||||| Sbjct 229056 TAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCAGTTGACC 229115 Query 45661 CTAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGCAATCGCGG 45720 | | |||||| ||| | || ||| | | |||||||| ||||| ||||| ||||| | Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 45721 GAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATTGATGCCATCTAAATCTC 45780 | |||||||| | ||||| ||||||||||| || ||||| || ||| || ||| | Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTA 229235 Query 45781 AATCTAGCGACTGGGGAAGAAAAACAGTACAAGTTACAAT 45820 || ||| | ||||||||| |||| || |||| | ||| Sbjct 229236 AAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAAT 229275 >seq8 Length=318055 Score = 143 bits (158), Expect = 3e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 45534 ACAGTTCTAGCTACAGCGTACACAGCAGACCC-AGCAGAGAATGGCGGTACATACGATGG 45592 |||||| |||||||||| || ||||| |||| ||| || || || || ||||| | || Sbjct 28544 ACAGTTGTAGCTACAGCATATACAGCTCACCCGAGC-GAAAACGGTGGCACATATGGCGG 28486 Query 45593 CGTAGTTAAAACAGCGATGGGACATAACTTATCTGCAAACCCTAGCATGAAAATGGTTGC 45652 | || ||| || ||||| ||| | ||| |||| || || | ||||||||| | || Sbjct 28485 CCGTGTATTAACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGC 28426 Query 45653 AGTTGACCCTAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTGAAGC 45712 |||||||| | |||||| ||| | || ||| | | |||||||| || || ||||| Sbjct 28425 TGTTGACCCGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGC 28366 Query 45713 AATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGAT 45758 ||||| |||||||||||||| ||||| |||||||| || || ||| Sbjct 28365 TATCGCTGGAGATACTGGTGGTGCAATTAAAGGTAACCGTATTGAT 28320 >seq361 Length=20807 Score = 127 bits (140), Expect = 2e-24 Identities = 171/235 (73%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 45530 AATTACAGTTCTAGCTACAGCGTACACAGCAGACCCAGCAGAGAATGGCGGTACATACGA 45589 ||||||||| ||| || || || |||||||| || |||||||| | | || | Sbjct 1057 AATTACAGTAGAAGCGACGGCATATACAGCAGATCCGAGTGAGAATGG---TTCGTATGG 1113 Query 45590 TGG-CGTAGTTAAAACAGCGATGGGACATAACTTATCTGCAAACCCTAGCATGAAAATGG 45648 ||| ||| || ||| || ||||| ||| | ||| | ||||| || | |||||| | Sbjct 1114 TGGTCGT-GTATTAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAA 1172 Query 45649 TTGCAGTTGACCCTAGAGTAATTCCACTTGGTTCTCGTATCTATGTAGAAGGATATGGTG 45708 |||| ||||| || | ||||||||| ||||| || | | |||||||||||||| | Sbjct 1173 TTGCTGTTGATCCGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAG 1232 Query 45709 AAGCAATCGCGGGAGATACTGGTGGAGCAATCAAAGGTAATCGAATCGATGTATT 45763 |||| || || ||||| || ||||| || || ||||| ||||| || |||||||| Sbjct 1233 AAGCGATTGCTGGAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATT 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526053793026600