Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031116.1 Length=163345 Score E Sequences producing significant alignments: (Bits) Value seq7 152 5e-32 seq8 149 7e-31 seq6 134 1e-26 seq16 125 7e-24 seq361 116 4e-21 seq5 107 2e-18 seq3 100 3e-16 >seq7 Length=350003 Score = 152 bits (168), Expect = 5e-32 Identities = 206/284 (73%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 48675 AGCAACAGCATATACTGCGCATCCATCGGAGAACGGTGGTACTTATGGTGGACGAGTACT 48734 ||| ||||| |||||||| ||||| || || |||||| ||||||||||| || | Sbjct 229000 AGCGACAGCGTATACTGCTGATCCAAGTGAAAA---TGGTACATATGGTGGACGCGTTTT 229056 Query 48735 AACGGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGA-TTATCGCAGTTGACC 48793 ||| || | || || ||||| |||||||| | | ||| ||||||||||||||| Sbjct 229057 AACTGCGATGGGGCATGATTTAACGGCAAATCCGA-ATATGAGAATTATCGCAGTTGACC 229115 Query 48794 CACGAGTAATTCCACTAGGTTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTA 48853 | |||||| ||| |||| ||||| || |||||||| || ||| ||| |||||| Sbjct 229116 CGAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTG 229175 Query 48854 GTGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCCATCAGCTTCTC 48913 |||||||||| | || |||||||||||| | |||||||| ||||| ||| | Sbjct 229176 GTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGATGTTTTAATGGGTTCAAAAAGTA 229235 Query 48914 AGTCTAATAACTGGGGCGTACGAACTGTTAAAGTAACAATCTTA 48957 | ||| || ||||| || |||||||||||| | ||| ||| Sbjct 229236 AAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTA 229279 >seq8 Length=318055 Score = 149 bits (164), Expect = 7e-31 Identities = 210/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 48675 AGCAACAGCATATACTGCGCATCCATCGGAGAACGGTGGTACTTATGGTGGACGAGTACT 48734 ||| ||||||||||| || || || || |||||||| || ||||| || || ||| | Sbjct 28536 AGCTACAGCATATACAGCTCACCCGAGCGAAAACGGTGGCACATATGGCGGCCGTGTATT 28477 Query 48735 AACGGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCC 48794 ||| |||| || || ||||| || |||||| || || ||||| |||||||| Sbjct 28476 AACTGCAATGGGTCATGATTTAACTGCGAATCCAAATATGAAAATGATCGCTGTTGACCC 28417 Query 48795 ACGAGTAATTCCACTAGGTTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAG 48854 |||||| ||| |||| ||||| || |||||||| |||||| ||| |||||| | Sbjct 28416 GAAAGTAATCCCATTAGGATCTAAAGTATGGGTAGAAGGTTACGGAGAAGCTATCGCTGG 28357 Query 48855 TGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCCATCAGCT-TCTC 48913 ||||||||||| || ||||||||||| | |||||| | || | ||||| | | | Sbjct 28356 AGATACTGGTGGTGCAATTAAAGGTAACCGTATTGATATCTTACTTGGATCAGATAGCGC 28297 Query 48914 AGTCTAATAACTGGGG-CGTACGAACTGTTAAAGTAACAATCTTAAACTA 48962 | || | || ||||| || | |||||||||||| | ||| ||||| || Sbjct 28296 TG-CTCAAAAATGGGGACGCA-AAACTGTTAAAGTGAAAATTTTAAAATA 28249 >seq6 Length=382643 Score = 134 bits (148), Expect = 1e-26 Identities = 163/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 48752 ACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACCCACGAGTAATTCCACTAG 48811 |||||||||| |||||| || | || |||||||| ||| | || |||||| ||| Sbjct 339029 ACTTAACAGCTAATCCAAACATGAAACTAATTGCAGTTGATCCAAGTGTCATTCCATTAG 339088 Query 48812 GTTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAGTGATACTGGTGGAGCGA 48871 |||| || || || ||||| |||||| |||||||||| |||||||||||||||| | Sbjct 339089 GTTCAAAAGTATGGGTTGAAGGTTACGGAGTAGCAATCGCTGGTGATACTGGTGGAGCTA 339148 Query 48872 TTAAAGGTAATAGAATTGATGTGCTAATGCC--ATCAGCTTCTCAGTCTAATAACTGGGG 48929 |||||||||||| ||| || || ||||||| || | | ||| || | || |||||| Sbjct 339149 TTAAAGGTAATAAAATCGACGTTTTAATGCCAGATAAAGGT-TCA-TCAAGTAGCTGGGG 339206 Query 48930 -CGTACGAACTGTTAAAGTAACAATCTTAAACTAGT 48964 |||| ||| |||| ||| | | | |||||||||| Sbjct 339207 ACGTA-AAACAGTTACAGTTAAAGTATTAAACTAGT 339241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 48736 ACGGCAACTGGATTCGACTTAACAGCAAATCC-ATCAGCTAAGATTATCGCAGTTGACCC 48794 ||||| ||||| | ||| || | |||||| | || | ||| | || |||||||| || Sbjct 157273 ACGGCGTCTGGAATAGACATAGGAAAAAATCCTAACATC-AAGTTAATTGCAGTTGATCC 157215 Query 48795 ACGAGTAATTCCACTAGGTTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAG 48854 ||| ||| |||||| | || ||| || ||||||||||| ||||| ||| | Sbjct 157214 TAAAGTTATTAAACTAGGAACGAAAGTTTGGGTTGAAGGATACGGTGATGCAATTGCTGG 157155 Query 48855 TGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCT 48896 ||||| ||||| || |||||||| |||| ||||||||| || Sbjct 157154 AGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGTTCT 157113 >seq16 Length=199848 Score = 125 bits (138), Expect = 7e-24 Identities = 158/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48754 TTAACAGCAAATCCATCAGCTAAGATTA-TCGCAGTTGACCCACGAGTAATTCCACTAGG 48812 ||||| ||||||||| | | | |||| | || || || ||| || || ||| |||| Sbjct 160274 TTAACTGCAAATCCAA-ACATGAAATTAATTGCTGTAGATCCATCTGTTATCCCATTAGG 160332 Query 48813 TTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTAGTGATACTGGTGGAGCGAT 48872 ||||| || | ||||||||||| ||||||||||| ||| | ||||||||| | || || Sbjct 160333 TTCTACTGTATATGTAGAAGGATATGGAACAGCAATTGCTGGAGATACTGGTAGTGCAAT 160392 Query 48873 TAAAGGTAATAGAATTGATGTGCTAATGCCA---TCAGCTTCTCAGTCTAATAACTGGGG 48929 ||||| ||| |||||| | |||||||| |||| |||| ||||| ||||||| Sbjct 160393 AAAAGGGCATATCATTGATCTATTAATGCCAAATTCAG---CTCAAGCTAATGACTGGGG 160449 Query 48930 CGTACGAACTGTTAAAGTAACAATCTTAAACTA 48962 | |||| |||||||| | ||| |||||||| Sbjct 160450 TAGAAGAACAGTTAAAGTTAAAATTTTAAACTA 160482 >seq361 Length=20807 Score = 116 bits (128), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 48674 AAGCAACAGCATATACTGCGCATCCATCGGAGAACGGTGGTACTTATGGTGGACGAGTAC 48733 |||| || |||||||| || |||| ||||| |||| | |||||||| || ||| Sbjct 1068 AAGCGACGGCATATACAGCAGATCCGAGTGAGAA---TGGTTCGTATGGTGGTCGTGTAT 1124 Query 48734 TAACGGCAACTGGATTCGACTTAACAGCAAATCCATCAGCTAAGATTATCGCAGTTGACC 48793 |||| |||| || || ||||||||||||||| || | || || ||||| | Sbjct 1125 TAACTGCAATGGGGCATGATTTAACAGCAAATCCAAATATGAAAGTAATTGCTGTTGATC 1184 Query 48794 CACGAGTAATTCCACTAGGTTCTAAGGTTCACGTAGAAGGATACGGAACAGCAATCGCTA 48853 | ||||||||| || || || || || ||||||||||| ||| ||| || ||| Sbjct 1185 CGAAAGTAATTCCGCTTGGATCAAAAGTATGGGTAGAAGGATATGGAGAAGCGATTGCTG 1244 Query 48854 GTGATACTGGTGGAGCGATTAAAGGTAATAGAATTGATGTGCTAATGCCATCAGCTTCTC 48913 | || || ||||| ||||||||||| ||| | |||||||| || | |||| | | Sbjct 1245 GAGACACCGGTGGTGCGATTAAAGGAAATCGTATTGATGTATTAGTCGGTTCAGATGGT- 1303 Query 48914 AGT-CTAATAACTGGGG 48929 ||| |||||| |||||| Sbjct 1304 AGTGCTAATAGCTGGGG 1320 >seq5 Length=406804 Score = 107 bits (118), Expect = 2e-18 Identities = 281/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 34396 TTTATCTAGATGGTAAAAATAAATATTACAATACATGGAATAAGACAGCGATAAAAGATG 34455 ||||| |||| ||||||||||||||||| || || ||||| || ||| ||||||||| Sbjct 286186 TTTATTTAGACGGTAAAAATAAATATTATAACACTTGGAACAAAACACAAATAAAAGATA 286245 Query 34456 GAGTAGTTCTCAACTGGACAGGTTCTCATAAAGGTGTAGGTATCCGATTCTACTCTGGAG 34515 | || |||| ||||| | | |||||||| || || || ||||||| | Sbjct 286246 TAAATATTATCAATTGGACGGAAACGAATAAAGGTACCGGAATTTCTTTATACTCTGCTG 286305 Query 34516 GAACTGACCATGAGATTTCATTTGTAGATACATCG--AATATCAAACTAGTAGGTTTAAG 34573 ||| || |||| ||||| ||||| || ||| ||||| ||| | ||||| | Sbjct 286306 GAAAAGAAAATGAAATTTCGTTTGT--TAACTTCGAAAATATTAAAGTTGTAGGAATGGA 286363 Query 34574 AAAAGGTATAGAACTAGAAGCTAAGGCTCCATCTACTGGAATGGCATGGGTGAACGCTAA 34633 || || | || ||| ||| || || || ||| || ||| | || || || Sbjct 286364 AACTGGACTGAAATTAGTAGCGAAAAAACCGAGCACCGGACAAGCTTGGATAAATGCCAA 286423 Query 34634 CCGATTCAATAACATCTCTATAGAAGACTGTGTAGAAATGATTACGATTGACAGTAGCGA 34693 || || | ||| | ||| |||||||||||||| | |||||| || || ||| | Sbjct 286424 TCGTTTTATGAACTTTTCTTTAGAAGACTGTGTAAATATGATTTATATGGATAGTCAAGT 286483 Query 34694 AACAATACCGAACGAATGTAGCGGTAACATCTTCTCAGGTTTGCAACTACAACCATCTAC 34753 ||| | || || ||| ||| || || || || | ||| |||| || || | Sbjct 286484 AACTACGCCAAATGAAATTAGTGGGAATCAATTTACAAACCTTCAAATACAGCCTTCAAA 286543 Query 34754 TGCAACTACAAAAGTCTTAAAGGTAAGTGGACAACATAACCGATTCGATGGTATGCTCTG 34813 | ||| | || | || |||||||||| |||||||| ||| |||| ||| | || Sbjct 286544 TAAAACAAAAAGCATTATACAGGTAAGTGGTCAACATAATGAATTTCATGGGATGGTGTG 286603 Query 34814 GGATATA 34820 |||| || Sbjct 286604 GGATTTA 286610 >seq3 Length=500241 Score = 100 bits (110), Expect = 3e-16 Identities = 196/288 (68%), Gaps = 14/288 (5%) Strand=Plus/Minus Query 27657 CCTTCATCTAACATACGGTGTGGGCAATATTTACCGTTACGCTCTTGGTGAGTCTTAACT 27716 |||||||| | ||| || |||||||||| || || | | | || || || || Sbjct 659 CCTTCATCGAGCATTCGATGTGGGCAATGCTTTCCACTCCACGATTTATGTGTACGTACA 600 Query 27717 TTAGAGATTGGGATATTGAAACGTACCATTAAATCTGAG--ATA-----TGCTCGATAGC 27769 ||| || || |||||||| || |||||| ||||| ||| |||| || Sbjct 599 TTACTAATCGGTATATTGAATTGTTTCATTAA--CTGAGCAATAACAATTGCT-----GC 547 Query 27770 ATTTAACTCAGCTTTACGATAACGTTCTCCTCCACTCAGAGAGTAACAGATTTCGACACC 27829 ||| ||| || || ||| | || || || || ||||| || || ||||| || || Sbjct 546 ATTATCCTCCGCCTTGTAATATCTATCCCCACCGCTTAGAGAATAGCAAATTTCCACTCC 487 Query 27830 GATAGAGTTACGGTTACCTGCACCATTACCATCTCCTGCATGCCAAGCATTTCGATTAAA 27889 |||||| ||||| ||||| || |||||||| ||||||||||||||||| |||| ||| Sbjct 486 GATAGATTTACGATTACCATTTCCGTTACCATCACCTGCATGCCAAGCATTACGATCAAA 427 Query 27890 TGGTACTACTTGTTGCACTTCAAAGTCATCAACTGCCGTATGGAACGA 27937 | | ||||| |||| |||||| ||||| ||| ||||| Sbjct 426 CAGAATACCTTGTACTGCTTCTTTGTCATCTACTGCAACATGAAACGA 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522540432171000