Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031121.1 Length=25908 Score E Sequences producing significant alignments: (Bits) Value seq7 334 1e-87 seq4 262 7e-66 >seq7 Length=350003 Score = 334 bits (370), Expect = 1e-87 Identities = 413/560 (74%), Gaps = 6/560 (1%) Strand=Plus/Plus Query 21849 ATGGGTAATATTGTAGATATTTCTAAATGGAATGGTGATATCAATTGGGACACAGCTAAA 21908 |||||| ||||||| |||||||| ||||||||||| || || || ||||| | || | Sbjct 348725 ATGGGTTATATTGTGGATATTTCGAAATGGAATGGCGACATTAACTGGGATATCGCAGCA 348784 Query 21909 CCTTATATTGATTTTATTATAGCTCGTGTTCAAGATGGTAGTAATTATCGTGATCCTCGT 21968 || | | ||||| | || || ||||| ||||||||| || ||| |||||| Sbjct 348785 CCACAATTGGATTTCGTAATTGCACGTGTGCAAGATGGTTCAAACTATGTAGATCCTTTA 348844 Query 21969 TATAATGGTTATGTTGCTGATATGAAACGTAAAGGAATA--CCTTTTGGTAGTTATGCTT 22026 ||||| |||||| | |||||| | |||||| || ||||||| |||||| | Sbjct 348845 TATAAAAATTATGTACAAGCAATGAAAGC--ACGGAATATTCCGTTTGGTAATTATGCGT 348902 Query 22027 TTTGTAGATTTGTTAGTGTAGCAGATGCTAAAAAGGAGGCTCAGGACTTCTGGGAGCGTG 22086 | ||| | || ||| |||| ||||| | || || ||||| ||| | |||| Sbjct 348903 TCTGTCGTTTCGTTTCAGTAGAGGATGCACGGATAGAAGCAAGAGACTTTTGGAACCGTG 348962 Query 22087 GAGATAAATCCTCAACGGTATGGGTAGCTGATGTTGAAGTAAAAACAATGGATGATATGA 22146 | |||||| |||| || ||||||||||| || ||||||| ||||||| | ||||||| Sbjct 348963 GTGATAAAAATGCAACAGTTTGGGTAGCTGACGTAGAAGTAAGAACAATGAACGATATGA 349022 Query 22147 GAGCTGGAACACAAGCTTTCATTGATGAATTACGACGATTAGGTGCTAAAAAAGTAGGGC 22206 |||| || |||||||||| |||||||||||||| ||||||| ||||| || | || Sbjct 349023 GAGCGGGTGCACAAGCTTTTATTGATGAATTACGCAGATTAGGAGCTAAGAAGGCTGGTT 349082 Query 22207 TATATGTCGGTCATCATATGTATGAACCTTTTGGAATGAGTCAAGTTCAA-TCAGACTTT 22265 ||||| | | |||||||||||||| || ||||||||| | || ||||| || || ||| Sbjct 349083 TATATATTGCTCATCATATGTATGCTCCATTTGGAATG-GCAAATTTCAATTCTGATTTT 349141 Query 22266 GTATGGATTCCTCGTTATGGTGGCAGTAAACCAGCTTATCCTTGTGACATCTGGCAGTAT 22325 ||||||||||||||||| ||||| | ||||| || ||| | ||||| || ||||| || Sbjct 349142 GTATGGATTCCTCGTTACGGTGGTAACAAACCGGCGTATTCATGTGATATTTGGCAATAC 349201 Query 22326 ACTGAAACAGGTCACACACCGGGAATTGGTAAGTGTGATTTGAATCAATTGATTGGAAAT 22385 || |||||||| | | || || || ||||||||||| ||| | ||||||||||| Sbjct 349202 ACAGAAACAGGGAATGTGGCTGGTATCGGCAAGTGTGATTTAAATAAGCTGATTGGAAAT 349261 Query 22386 AAGAATTTAGCTTACTTTAC 22405 ||| ||||||| ||||| Sbjct 349262 AAGCCGTTAGCTTGGTTTAC 349281 >seq4 Length=425142 Score = 262 bits (290), Expect = 7e-66 Identities = 385/542 (71%), Gaps = 2/542 (0%) Strand=Plus/Plus Query 21848 TATGGGTAATATTGTAGATATTTCTAAATGGAATGGTGATATCAATTGGGACACAGCTAA 21907 |||||| |||||||||||||||| ||||||||||| ||| |||||||| | || Sbjct 333744 TATGGGGTATATTGTAGATATTTCAAAATGGAATGGAACTATTAATTGGGATATTGCAGC 333803 Query 21908 ACCTTATATTGATTTTATTATAGCTCGTGTTCAAGATGGTAGTAATTATCGTG-ATCCTC 21966 | || | | ||||| | || ||| | ||||||||||| |||| | ||| || | Sbjct 333804 ATCTCAGTTAGATTTAGTGATTGCTAGAGTTCAAGATGGCTCTAAT-ACGGTGGATTTTA 333862 Query 21967 GTTATAATGGTTATGTTGCTGATATGAAACGTAAAGGAATACCTTTTGGTAGTTATGCTT 22026 ||| | ||||||| ||| |||||| | | || || || |||| |||||||| Sbjct 333863 TGTATCAAAATTATGTTAGTGAAATGAAAAAGCATAGTATCCCATTCGGTAATTATGCTT 333922 Query 22027 TTTGTAGATTTGTTAGTGTAGCAGATGCTAAAAAGGAGGCTCAGGACTTCTGGGAGCGTG 22086 |||| | ||| | | | || ||||| || || ||||| || || || ||| | |||| Sbjct 333923 TTTGCCGTTTTATATCTATTGCTGATGCAAAGAAAGAGGCACAAGATTTTTGGAATCGTG 333982 Query 22087 GAGATAAATCCTCAACGGTATGGGTAGCTGATGTTGAAGTAAAAACAATGGATGATATGA 22146 | ||| |||| | | | | |||||||| || | ||||| |||| |||| |||||| Sbjct 333983 GTGATCAATCTGCTAAGTTTTGGGTAGCGGACATAGAAGTTCAAACGATGGTAGATATGC 334042 Query 22147 GAGCTGGAACACAAGCTTTCATTGATGAATTACGACGATTAGGTGCTAAAAAAGTAGGGC 22206 || || ||||| || || |||||||||||||| || ||||||| |||||||||| Sbjct 334043 AAGGCGGGACACAGGCATTTATTGATGAATTACGCCGTTTAGGTGTGGAAAAAGTAGGAT 334102 Query 22207 TATATGTCGGTCATCATATGTATGAACCTTTTGGAATGAGTCAAGTTCAATCAGACTTTG 22266 |||| || || ||||| | |||| | | |||||| || | || || | || || Sbjct 334103 TATACGTAGGACATCACACGTATTTATCATTTGGAGCATGTAATATTGAAGCTGATTTCA 334162 Query 22267 TATGGATTCCTCGTTATGGTGGCAGTAAACCAGCTTATCCTTGTGACATCTGGCAGTATA 22326 ||||||| ||||||||||| || | ||| |||| ||||| || || || ||||| |||| Sbjct 334163 TATGGATCCCTCGTTATGGAGGGAATAAGTCAGCATATCCATGCGATATGTGGCAATATA 334222 Query 22327 CTGAAACAGGTCACACACCGGGAATTGGTAAGTGTGATTTGAATCAATTGATTGGAAATA 22386 | || |||| | || || ||||| || |||||| |||||| ||| | ||||||| Sbjct 334223 CGGATTCAGGGAATGTTCCTGGTATTGGGAAATGTGATCTGAATCGATTAGTAGGAAATA 334282 Query 22387 AG 22388 || Sbjct 334283 AG 334284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 82781987898985