Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq2489 86.0 1e-11 seq1 84.2 3e-11 >seq2489 Length=589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/177 (72%), Gaps = 10/177 (6%) Strand=Plus/Plus Query 3065 GCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTTCAAATCCTTCCCTCGCCACCA- 3123 || ||||||||||| | | |||||||| |||| |||| |||| ||| | |||||| Sbjct 368 GCGGACTGTAAATCCGCT-CCTTCGGG-TTCGGCAGTTCGAATCTGCCCCCCTCCACCAT 425 Query 3124 ----AATTCTAGGGGTATAGCCAAGCGGTAAGGCCCAGGGCTTTGATCCCTGTATGCTCT 3179 |||| ||| ||||||||||||||||||| || |||||| || |||| || Sbjct 426 TCTTAATTAATGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTCATGCGCT 485 Query 3180 GGTTCAAATCCAGATGCCCCTTCCATTTTATTGTCTCGTAGCTCAGTTGGTCAGAGC 3236 ||||| ||||||| | ||| ||| ||| | ||||||||||||| ||||| Sbjct 486 GGTTCGAATCCAGCTAGCCCAGCCA--TTAAGAGCCATTAGCTCAGTTGGT-AGAGC 539 >seq1 Length=1156483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/137 (75%), Gaps = 8/137 (6%) Strand=Plus/Minus Query 3218 TAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCAAGTCCACTC 3277 |||||||| |||| ||||||| ||||||||||||| |||||| |||||| |||||| | Sbjct 1155575 TAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGATGGTTCGAGTCCATTT 1155516 Query 3278 GAGACAACC--AATTCGGTT---CTGTAGCTCAGTCGGTAGAGCACGCCACTCATAATGG 3332 | | ||| |||| ||| | |||||||||| |||||||| | || ||| | Sbjct 1155515 AGGCCCACCATAATT--GTTCCGCAGTAGCTCAGT-GGTAGAGCTATCGGCTGTTAACCG 1155459 Query 3333 CGCGGTCGTTGGTTCGA 3349 ||||||| ||||||| Sbjct 1155458 ATCGGTCGTAGGTTCGA 1155442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783306682560000