Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031245.1 Length=221908 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 7e-13 seq1 84.2 3e-11 >seq9 Length=252781 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 129968 CTGAGTTAATCAAGCATGCATCTAATGCATTCCTAGCTACTAAAATATCATTTATGAATG 130027 ||||| | || ||| |||| || |||||||| |||| ||||| || ||||| |||| Sbjct 245329 CTGAGATGATTAAGTATGCCTCAAATGCATTTTTAGCAACTAAGATTAGCTTTATTAATG 245388 Query 130028 GTATTGCTAAGCTATGTGAATTCTACGGAGGTAATGTTGACGAGGTAGCTCGTGGGATGG 130087 ||| | || | ||||| | |||| |||||||| || || || |||| |||| Sbjct 245389 AAATTTCCAATATTTGTGAGAAATTAGGAGCGAATGTTGAAGATGTTGCAGGTGGAATGG 245448 Query 130088 GAATGGATAGTCGAATCGGTAATCAATTCTTAAAAGCTGGATTAGGATTCGGAGGTTCAT 130147 | |||||| ||||| || | ||| ||||| || || | || | || || |||| Sbjct 245449 GTATGGATCACCGAATTGGAAGAGCATTTTTAAATGCCGGTATTGGTTATGGGGGCTCAT 245508 Query 130148 GTTTCCCTAAGGAT 130161 ||||||| |||||| Sbjct 245509 GTTTCCCAAAGGAT 245522 >seq1 Length=1156483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 206/309 (67%), Gaps = 4/309 (1%) Strand=Plus/Plus Query 171216 CATTATACGATTTAATGTCAGCATTTCAGAAATCCATTCGAGGTTCCGATGTTAATGCAG 171275 |||||| || || | ||||||||||| ||||| | || || ||||| ||||||| Sbjct 674332 CATTAT--GACGTATTATCAGCATTTCAAAAATCAGTGCGCGGAAGTGATGTAAATGCAG 674389 Query 171276 CATTATACTACCTAGCATTACTTATCGAGAGC-GGAGACTTACCTAGTATTTGTAGAAGA 171334 | | | || ||||| ||||| || ||| || || |||| |||||| | ||| | Sbjct 674390 CGCTCCATTATTTAGCACGCCTTATTGA-AGCAGGTGATTTACAAAGTATTGGCAGACGC 674448 Query 171335 CTTCTAGTTATAGCGGACGAGGACATAGGTCTAGCTCGACCTGAAGTAGCTACACATGTA 171394 ||||| |||| || | || || || || || ||| | || ||| | ||| | | Sbjct 674449 CTTCTTATTATGGCTTATGAAGATATTGGACTTGCTAGCCCACAAGCTGGACCACGTACA 674508 Query 171395 CTAACAGCAGTTCAGATAACTGAAAGGATAGGACTACCTGAAGCTAGAATTACTTTATCT 171454 ||| | ||| || | | ||||| | | ||| | || ||||| | || | | | Sbjct 674509 CTAGCTGCAATTGAATCAGCTGAACGAGTTGGATTCCCAGAAGCACGCATCCCACTTGCA 674568 Query 171455 AAAGCTGTTATTGAACTATGTCTATCTCCTAAATCAAATACTGCCTACCAAGCTATCGAT 171514 || || ||||| || ||||| |||| || ||||||||| | || || |||| | ||| Sbjct 674569 AATGCCGTTATCGAGCTATGCTTATCACCAAAATCAAATTCAGCTTATAAAGCACTTGAT 674628 Query 171515 AATGCATTA 171523 ||||||| Sbjct 674629 GCTGCATTA 674637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709929277149600