Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010185.1_202016-07-09] 5,445 sequences; 33,462,554 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq69 86.0 7e-12 seq4130 82.4 9e-11 seq3539 82.4 9e-11 seq3015 82.4 9e-11 seq325 82.4 9e-11 seq1 82.4 9e-11 >seq69 Length=88854 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17858 AGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 17917 ||||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 87859 AGGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGAT 87800 Query 17918 TCCGCTATTCTCCAT 17932 |||||| |||||| Sbjct 87799 CCCGCTAGGCTCCAT 87785 >seq4130 Length=254 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 76 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 17 Query 17919 CCGCTATTCTCCA 17931 |||||| ||||| Sbjct 16 CCGCTAGGCTCCA 4 >seq3539 Length=324 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 155 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 96 Query 17919 CCGCTATTCTCCA 17931 |||||| ||||| Sbjct 95 CCGCTAGGCTCCA 83 >seq3015 Length=428 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 150 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 91 Query 17919 CCGCTATTCTCCA 17931 |||||| ||||| Sbjct 90 CCGCTAGGCTCCA 78 >seq325 Length=23210 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 23208 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 23149 Query 17919 CCGCTATTCTCCA 17931 |||||| ||||| Sbjct 23148 CCGCTAGGCTCCA 23136 >seq1 Length=1156483 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 |||| ||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 1156481 GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATC 1156422 Query 17919 CCGCTATTCTCCA 17931 |||||| ||||| Sbjct 1156421 CCGCTAGGCTCCA 1156409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596266613841200