Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1812 275 6e-69 seq1990 114 1e-20 seq2248 107 2e-18 seq2275 95.1 1e-14 seq1955 95.1 1e-14 seq4656 86.0 6e-12 >seq1812 Length=13802 Score = 275 bits (304), Expect = 6e-69 Identities = 963/1493 (65%), Gaps = 50/1493 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 3554 GAAGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 3495 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 3494 ATTGGCGCGCACACGAGCGAGTTACGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 3435 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||| | ||| |||||| |||||| ||||| |||| | |||| Sbjct 3434 GACCAGTCCCACAGATTGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAGCTCGCCC 3378 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| ||| | || Sbjct 3377 TGAGAAGCCGGAGATCCAGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATG 3318 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 3317 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 3258 Query 22778 ATTTTCTTGTTCAA-TTCGGCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | || ||| | ||||| ||| ||||||| || || Sbjct 3257 ATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 3202 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 3201 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 3142 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 3141 TTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 3082 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| | | | || || Sbjct 3081 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TCCTTGATGAAGCTC 3024 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 3023 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 2965 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | ||| | ||||| | ||| | Sbjct 2964 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCT 2906 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || ||||||||||| | || |||| || |||||||| | || | Sbjct 2905 TGTTCGCG-GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 2847 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTAC 23251 ||||| ||| | | || ||| | | | | | | ||| || | ||||| Sbjct 2846 ATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTAT 2787 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 || | | |||| ||| || || | || || ||| |||||||| | || Sbjct 2786 TTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCG 2727 Query 23312 GGACACATGAGACTCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 || || | |||| ||| || | | | || || || ||| |||||||| || || Sbjct 2726 GGGCAGAAGAGAGGCCA-ATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 2668 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || || |||| || || || ||||| || ||||| |||||| |||||| | Sbjct 2667 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAG 2608 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| || || || ||||| || ||||||||||||||||| | || || || || || Sbjct 2607 GTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGG 2548 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| || Sbjct 2547 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 2488 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTT 23610 || | ||||| || |||| | ||| || | || || | || || | ||| Sbjct 2487 GACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 2428 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 ||| | | ||||| || || ||| | | || || || | |||||| || || || Sbjct 2427 GTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGT 2368 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 |||||| ||||| || || || || || ||| ||||| |||||| || || | || Sbjct 2367 GTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTG 2308 Query 23731 CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGA 23790 || | ||||| |||| ||| || ||||| |||||| |||||||| | | || Sbjct 2307 CGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGA 2248 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 ||| || ||||||| | | | || |||||||| | ||||| || |||| |||||| Sbjct 2247 CATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGAC 2188 Query 23851 GCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 ||||| | ||||| ||| || | || ||||| | ||||| || | || || Sbjct 2187 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTT---GCCGTCGATGCGAAGCAAGTA 2131 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || |||| | |||||| || ||||| |||| ||| || || || |||| Sbjct 2130 GGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 2078 >seq1990 Length=108331 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 53012 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 52953 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 52952 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 52894 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || || || ||| | Sbjct 52893 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 52834 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 52833 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 52797 >seq2248 Length=48530 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 4068 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4009 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 4008 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 3950 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || || ||| || ||| Sbjct 3949 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 3890 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 3889 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 3831 >seq2275 Length=13961 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || |||| Sbjct 27 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 86 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 87 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 146 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || ||||||||||| ||| | || || Sbjct 147 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 255 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 314 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 315 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 374 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 375 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 409 >seq1955 Length=114760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 44255 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 44314 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 44315 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 44373 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 44374 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 44409 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 44711 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 44770 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 44771 GACACGATCGACAACGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 44829 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || ||||| ||||| ||| | ||| | | || | || | | ||||| Sbjct 44830 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-CGCG-GATTA 44886 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || |||| || Sbjct 44887 CAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 44922 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 44483 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 44542 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||| ||||| ||| | || || ||||| Sbjct 44543 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGATAAGGAGGGCATTCCCCCAGACCA 44601 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||||||||| ||| | || || || | |||||| || Sbjct 44602 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 44661 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 44662 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 44694 >seq4656 Length=88185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 87837 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 87896 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 87897 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 87956 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 87957 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 87991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740383958480