Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1812 183 4e-41 seq1517 134 2e-26 seq1089 131 2e-25 seq3884 104 3e-17 >seq1812 Length=13802 Score = 183 bits (202), Expect = 4e-41 Identities = 532/808 (66%), Gaps = 21/808 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || ||||| ||||||| ||||| |||| ||||| || | || ||||| || Sbjct 2166 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 2225 Query 111671 TTTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||| || | ||| || |||||| | | || || | |||||| | || || |||| Sbjct 2226 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTT-ACCCACGCCTCGCCGACGCTCT 2284 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || || || | || |||||||| | | | ||||| | Sbjct 2285 TCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATG 2344 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | |||||||||| ||| || | || || | ||||| ||| || | Sbjct 2345 ATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCG 2404 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 |||||||||| || |||||| | || | || | | | ||| || | | || || Sbjct 2405 GTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACC--GGCTCCTACATCGCCGGCAC 2462 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||| || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 2463 AAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTA 2522 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||||| ||| ||||| | ||| | |||| |||| || ||||| || Sbjct 2523 CGTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTG 2579 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | || ||||| || | || ||||| || | ||||| | || Sbjct 2580 GCACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCG 2639 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | || |||||||||| || ||||||||||| ||||| |||||| || | || ||| Sbjct 2640 CGCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAG 2697 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | ||| ||||| ||||||| || || | | | || ||||| ||| ||| | | Sbjct 2698 GCCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTAT 2757 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || |||||||| ||| | | | || ||||| | || | || || | ||| Sbjct 2758 GGCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACG 2817 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | || || || | | | ||| | || ||||| | | || ||| ||||| | || Sbjct 2818 ATCCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCC 2876 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||| |||||||||||| ||| | || || ||||||||| | || ||| Sbjct 2877 TTTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGAT 2936 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATC 112406 |||| || ||||| || || || ||| Sbjct 2937 CAAGTCGTCGAACCTGTGCACCGAGATC 2964 >seq1517 Length=61565 Score = 134 bits (148), Expect = 2e-26 Identities = 281/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 35505 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 35564 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 35565 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 35624 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||| | ||||| ||| || ||| ||| ||| | ||||| Sbjct 35625 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 35684 Query 13772 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 13830 ||| || || ||| | || ||| ||| |||||| || | ||||||| || | | || Sbjct 35685 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 35743 Query 13831 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 13890 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 35744 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 35803 Query 13891 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 13950 ||||||| ||||| ||||| || || | ||||||| ||| | || || | Sbjct 35804 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 35863 Query 13951 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 14006 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 35864 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 35919 >seq1089 Length=46213 Score = 131 bits (144), Expect = 2e-25 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 176723 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 176782 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 33895 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 33836 Query 176783 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 176842 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 33835 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 33776 Query 176843 TTCTTGAGATCG-TTGAACTCTTGG-TTTGATG-TGAGCTGTGTGACAGAGGCATCACGA 176899 | ||| ||||| ||||| ||| || ||| | ||| | || | | || ||||| Sbjct 33775 TGCTT--GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 33719 Query 176900 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAG 176959 || || |||| || || | |||||| ||||| |||| || ||||| || |||| Sbjct 33718 ACGTTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCC 33659 Query 176960 AGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || ||||||| || || ||||| || || |||| |||||| || |||||| Sbjct 33658 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 33599 Query 177020 --CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 177054 || | | | |||||| || ||||||||||| || Sbjct 33598 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 33564 >seq3884 Length=41879 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 13592 CCGCATCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 13651 |||| |||| || ||||| | || ||| ||| || |||||| ||| | || || Sbjct 5409 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 5468 Query 13652 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 13711 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 5469 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 5528 Query 13712 GCTCGTAAAGAATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAA 13771 | |||| ||||| ||||||||||| |||| ||| || ||| ||| ||||||||||| Sbjct 5529 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 5588 Query 13772 CCATGAATCACC 13783 ||| || || || Sbjct 5589 CCACGAGTCCCC 5600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620706171921680