Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1812 140 4e-28 >seq1812 Length=13802 Score = 140 bits (154), Expect = 4e-28 Identities = 431/658 (66%), Gaps = 8/658 (1%) Strand=Plus/Minus Query 110375 CCAAG-TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| ||||| || |||||||| ||| || || || |||||||| | ||| | Sbjct 2930 CCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTG 2871 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGC 110492 |||||||| ||| | | ||||| || | ||| | | | ||| |||||| ||| Sbjct 2870 CCAGTTTCGACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCG-CGGGGATCGTTTT 2812 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 || ||| | || |||| ||||| || | ||||| | || |||| || || || Sbjct 2811 CTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGAC 2752 Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612 || || || || | | |||| |||||||| | ||||| || | |||| || Sbjct 2751 TTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGAC 2692 Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672 | || |||||| || || |||||||| | ||| |||| || ||||| ||| | || Sbjct 2691 ACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTC 2632 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 || | || ||||| ||| || |||| || || | || || | |||||| || || Sbjct 2631 CTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTC 2572 Query 110733 GAGATAGACAGCGATGGATCCCTTACGACGAC--CCGCCT-GGTTAACATAGCGTGCTGT 110789 ||| |||| |||| || ||| ||| || ||| ||| || ||||| || || Sbjct 2571 GAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGT 2512 Query 110790 GGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | ||| |||| | |||||| || | ||| || | || | || ||||| || || Sbjct 2511 GTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGAT 2452 Query 110850 TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACT 110909 ||| | || || |||| |||||| || ||| |||||||| || ||| Sbjct 2451 GTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGA 2392 Query 110910 AATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG 110968 || | || ||| ||| | || || | ||||| || ||||||||||| |||| | | Sbjct 2391 GATGAGCGCGCACGTCT-TAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCG 2333 Query 110969 CAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 | || || || || || | ||| || |||||||||| || |||||||| || || Sbjct 2332 TGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 2275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588941625888200