Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1990 136 4e-27 seq2248 132 5e-26 seq1812 89.7 5e-13 >seq1990 Length=108331 Score = 136 bits (150), Expect = 4e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || | ||| || || || |||||||| |||||||||||| | Sbjct 52782 CCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 52841 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| ||||| || | ||| ||||| || ||||| Sbjct 52842 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 52901 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || || ||||| ||| | ||||||||||| || || Sbjct 52902 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 52961 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 ||||| || || || || || || | ||| || || || |||||| Sbjct 52962 TCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 53006 >seq2248 Length=48530 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| |||||||||||| | | |||| | || |||||||| Sbjct 3866 GTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTG 3925 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| || | ||| ||||| || ||||| |||||||| || ||||| || || Sbjct 3926 CTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 3985 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||||||||| || || ||||| || ||||| || || || Sbjct 3986 GGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 4045 Query 134690 TAAAGTTTTAACGAAAATTTGCA 134712 | || || || || ||||||| Sbjct 4046 GAGGGTCTTGACAAAGATTTGCA 4068 >seq1812 Length=13802 Score = 89.7 bits (98), Expect = 5e-13 Identities = 330/516 (64%), Gaps = 11/516 (2%) Strand=Plus/Plus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGT 7531 |||| ||||||| || ||| || |||| | | ||||| | || | ||||||| Sbjct 2078 ACGACCGCGATTTCGGCTACAACTACTTTGGCTTCAAAACGCTCGAACGCTCCTACTTGC 2137 Query 7532 TGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGG 7591 | ||| ||||| | ||| ||||| ||||||||||| |||| || || || | Sbjct 2138 TTCGCATCGACGGCAAGGTCGCCGAACGCCCGCAACACATGCTCATGCGTGTCGCCGTCG 2197 Query 7592 GCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAAC 7651 |||| ||||| | |||||||| || |||| | ||||| | | ||||| | Sbjct 2198 GCATCCACGGTCACGACATTGAGCGCGTCTTGCAGTCGTACAACCTTATGTCCGAGCGCT 2257 Query 7652 AGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGC----GCCTCAATTG 7707 | ||||| ||||| ||||| || | || ||| || ||||| || || | Sbjct 2258 ACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGG----AACGCCTCACCCGCAGCTT 2313 Query 7708 TCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTG 7767 || || ||||| || | || ||| || || || || ||||||||| ||||||| Sbjct 2314 TCGTCCTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTT 2373 Query 7768 CGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTG 7827 ||||| || ||||| || ||| || || ||| ||| | | || || | Sbjct 2374 AAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATC 2433 Query 7828 CGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATG 7887 ||||| | ||| | ||||| ||| ||||| | | | ||| | | |||||| Sbjct 2434 CGCGCGACCGGCTCCTACATCGCCGGCACAAACGGCTACTCGAACGGCATTGTCCCCATG 2493 Query 7888 TTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAAAGGC 7944 | || || | ||| ||| | | ||| | || ||||| || || ||||| || Sbjct 2494 CTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCAACAAGCGTCCCGGA 2553 Query 7945 GCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 ||| || ||||| | |||||||||||||| ||| Sbjct 2554 GCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGAC 2589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505368903685880