Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1812 172 7e-38 seq1517 140 4e-28 seq3884 113 6e-20 >seq1812 Length=13802 Score = 172 bits (190), Expect = 7e-38 Identities = 557/858 (65%), Gaps = 15/858 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| ||||| || || ||| ||| | | |||||| | || || Sbjct 3017 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 2958 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||| || ||| ||||| || | |||||||||||| |||||||| Sbjct 2957 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 2898 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || || ||||||||||| | || | || || || ||| | || ||||| || | | Sbjct 2897 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 2838 Query 111416 CAAA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 |||| | | || || || | | ||||| || |||||| ||||| || | | Sbjct 2837 CAAAGCTTTTGC-GCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 2779 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 | ||| |||||||| || | ||| ||| || || || | | | || ||||| Sbjct 2778 CAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 2719 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 |||| ||| | || | |||| || |||| ||||||||| || |||||||| || | Sbjct 2718 GAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGC 2659 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 | |||||||| | | ||| | || || | || ||||| || | || ||||| Sbjct 2658 AAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 2599 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 111712 || | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 2598 TTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 2542 Query 111713 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| |||| | || |||||||| ||| ||| | || || ||||| || | ||| Sbjct 2541 GTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAAT 2482 Query 111769 ACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGG 111826 || | || | || ||||| || ||| || ||| | || | | | ||| Sbjct 2481 GCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAG--CCGGTCGCGCGGATGTTGTGG 2424 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 ||| || || ||||| || || ||| ||||| |||| ||| | |||| || | Sbjct 2423 ATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCG 2364 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 || || || | || || || ||||| | | || ||||| || || | |||||| Sbjct 2363 TAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 2304 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 112006 || || || || |||||||| || || | ||||| | || | | |||||| Sbjct 2303 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATA 2244 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 || ||| | || |||||| |||||||| | ||||||||||||| ||||| ||| Sbjct 2243 AGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGC 2184 Query 112067 ATGAACATGTACTGTGGG 112084 |||| ||||| || ||| Sbjct 2183 ATGAGCATGTGTTGCGGG 2166 >seq1517 Length=61565 Score = 140 bits (154), Expect = 4e-28 Identities = 282/416 (68%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 35505 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 35564 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || | || Sbjct 35565 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTG 35624 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||| | ||||| ||| |||||| ||| ||| | ||||| Sbjct 35625 GATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 35684 Query 9335 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGATTACCGAGGGTATCA 9393 ||| || || ||| | || ||| ||| |||||| || | ||||||| || | | || Sbjct 35685 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCG 35743 Query 9394 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAG 9453 | ||| | ||| || |||| | | | | | || || || | || || | | Sbjct 35744 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 35803 Query 9454 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 9513 ||||||| ||||| ||||| || || | ||||||| ||| | || || | Sbjct 35804 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCG 35863 Query 9514 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 9569 ||||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 35864 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 35919 >seq3884 Length=41879 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| |||| ||| ||| || |||||| ||| | || || Sbjct 5409 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTC 5468 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || ||| |||||||||| | ||| | || || Sbjct 5469 CGAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 5528 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 5529 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 5588 Query 9335 CCATGAATCACC 9346 ||| || || || Sbjct 5589 CCACGAGTCCCC 5600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627995346482400