Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1517 147 3e-30 seq1812 138 1e-27 seq1089 122 1e-22 seq3884 105 8e-18 >seq1517 Length=61565 Score = 147 bits (162), Expect = 3e-30 Identities = 283/415 (68%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| ||||| ||| ||| || || ||| || || || ||| | Sbjct 35506 CGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 35565 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| ||||||||| | ||| | || | ||| Sbjct 35566 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTGG 35625 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||| | ||||| ||| |||||| ||| ||| | |||||| Sbjct 35626 ATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAAC 35685 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAA 7470 || || || ||| | || ||| ||| ||||||||| | ||||||| || | | || Sbjct 35686 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCGC 35744 Query 7471 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGA 7530 | ||| | ||| || |||| | | | | | || || || | || | | || Sbjct 35745 CGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTGA 35804 Query 7531 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 7590 |||||| ||||| ||||| || || | ||||||| ||| | || || || Sbjct 35805 TTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCGC 35864 Query 7591 CGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTGAGGCGGTTCATTGAG 7645 |||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 35865 CGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 35919 >seq1812 Length=13802 Score = 138 bits (152), Expect = 1e-27 Identities = 520/807 (64%), Gaps = 19/807 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| || ||||| ||||||| || ||| |||| || || || | |||||||| || Sbjct 2166 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 2225 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || | ||| || |||||| | | || | ||||| | || || ||||| Sbjct 2226 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTT 2285 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || || ||||| || | | ||||| || Sbjct 2286 CAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGA 2345 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || || || | || |||| | ||| |||| ||||| ||| || || Sbjct 2346 TTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 2405 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || || |||||| | | | || | ||| || ||| || ||| Sbjct 2406 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCCGGCACA 2463 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 2464 AACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 2523 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| ||| | |||| |||| || ||||| ||| Sbjct 2524 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 2580 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | || ||||| || | || ||||| || | ||||| | ||| Sbjct 2581 CACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCGC 2640 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || |||||||||| || ||||||||||| ||||| |||||| || | || |||| Sbjct 2641 GCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGG 2698 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| ||||| ||||||| || || | | | || || || ||| ||| | | | Sbjct 2699 CCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATG 2758 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | |||||||| ||| | | | || ||||| | || || || || | ||| Sbjct 2759 GCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGA 2818 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || || || | | | ||| | || ||||| | | || ||| ||||| | || Sbjct 2819 TCCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCT 2877 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| |||||||||||| ||| | || || ||||||||| | || |||| Sbjct 2878 TTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATC 2937 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATC 105016 ||| || || || || || || ||| Sbjct 2938 AAGTCGTCGAACCTGTGCACCGAGATC 2964 >seq1089 Length=46213 Score = 122 bits (134), Expect = 1e-22 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 33895 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 33836 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 33835 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 33776 Query 169280 TTCTTGAGATCG-TTGAACTCTTGG-TTTGATG-TGAGCTGTGTGACAGAGGCATCGCGA 169336 | ||| ||||| ||||| ||| || ||| | ||| | || | | || || || Sbjct 33775 TGCTT--GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 33719 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||| ||||| |||| || ||||| ||||| | Sbjct 33718 ACGTTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCC 33659 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| ||||| | ||| || || || || ||||| | ||||||||| || || Sbjct 33658 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 33599 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 169491 || | | | |||||| || ||||||||||| || Sbjct 33598 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 33564 >seq3884 Length=41879 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || || || || || || | Sbjct 5410 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTCC 5469 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| |||||||||| | ||| | || ||| Sbjct 5470 GAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGG 5529 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 5530 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 5589 Query 7412 CATGAATCACC 7422 || || || || Sbjct 5590 CACGAGTCCCC 5600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583226759441560