Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1812 282 5e-71 seq1089 132 5e-26 >seq1812 Length=13802 Score = 282 bits (312), Expect = 5e-71 Identities = 523/765 (68%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||||||| ||||| ||| ||| || ||||| Sbjct 2180 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGTCTTGCAGTCGTACA 2239 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||||||| |||||| |||| || || |||||||| || ||| Sbjct 2240 ACCTTATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 2299 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| ||| |||||||| ||||||||||||| ||||| || |||| Sbjct 2300 CTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCA 2359 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| ||||| ||| ||| || | |||||||||| | |||||||||||| | Sbjct 2360 TTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 2419 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || || |||||| | | | | Sbjct 2420 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACAAACGGCTACTCGAACG 2479 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || || || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 2480 GCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 2539 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||||||| | | || | Sbjct 2540 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAAT 2599 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 2600 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCGCGCTCGTGATCTCTTCTTTG 2659 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || || |||||| | || ||| | || || ||| || Sbjct 2660 CGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGGCCGCCGGCGATTGGCCTCTCT 2719 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||||||||| | ||||| || |||||||| || ||| Sbjct 2720 TCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAGGAGTTCCGCGCCTTGT 2779 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||| | | || |||| || | ||| Sbjct 2780 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCGCAAAAGCTTTGG 2838 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || || | |||||| || || || | || | ||| |||||| || | Sbjct 2839 TACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCTTTTATGCTCTACAAAGACGCC 2898 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| |||| ||||| ||||| | ||| ||||| ||| Sbjct 2899 GCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATCAAGTCG 2943 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || ||| || Sbjct 3895 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGACTTGTC 3954 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | ||| |||||||| || || || |||||| | || || || Sbjct 3955 CGCCGACCGAGGTGCCTTCATTGACCAGTCGCAATCGCTTAACATCCACTTGTCGAGCCC 4014 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| ||||||| ||||| |||||||| Sbjct 4015 AACGATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAGAGGACTGAAGACGGG 4074 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || || ||| Sbjct 4075 CATGTACTACTTGCGCACGCGGGCC 4099 >seq1089 Length=46213 Score = 132 bits (146), Expect = 5e-26 Identities = 277/407 (68%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 34776 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 34717 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||| || ||||| | | ||||| | ||| | ||||| | Sbjct 34716 AAGACGGCTCGATGCTTTGCCCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 34657 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| || ||| | Sbjct 34656 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAACG--AGCCGAA 34601 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 34600 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 34541 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | || ||||| |||| |||| | Sbjct 34540 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATT 34481 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 34480 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATC 34421 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 ||| ||||| || ||||| || || | | |||||||| || Sbjct 34420 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTG 34374 Score = 105 bits (116), Expect = 7e-18 Identities = 183/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 34621 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 34562 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || Sbjct 34561 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATG 34502 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 34501 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCG 34442 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 34441 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 34382 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| ||||| | ||||| Sbjct 34381 TTGCGTTGACCCGGCTTAAACCCATC 34356 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 32603 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 32544 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 32543 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 32494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547184063106200