Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1955 111 1e-19 seq4656 100 2e-16 seq2275 100 2e-16 seq2248 91.5 1e-13 seq1990 91.5 1e-13 >seq1955 Length=114760 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 44464 CACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 44405 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||| | ||| | || || |||||| Sbjct 44404 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 44345 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| || |||||| || || | |||||| | | Sbjct 44344 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTCT 44286 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | ||||| ||||| || |||||||| ||||||| Sbjct 44285 TGCCCGTAAGCGTCTTGACAAAGATCTGCATCT 44253 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || |||||||| || || || | || || Sbjct 44692 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 44633 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||| || ||||| | ||| | || ||| || ||| Sbjct 44632 GAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTATCCTG 44573 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| || ||||| || || | |||||| | | Sbjct 44572 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 44514 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || |||||||| ||||| Sbjct 44513 TGCCCGTCAGCGTCTTGACAAAGATCTGCAT 44483 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || ||||| || || || || | || || Sbjct 44920 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATCCTC 44861 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| |||||||| || || | ||||||||||| | ||| | || || |||||| | Sbjct 44860 GAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC-T 44802 Query 39195 GATTTTCTGT-TTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || | | || |||| ||| | | | ||| || |||||| || || | |||||| | Sbjct 44801 GAATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGACGACTCGACCTCGAGCGTGATCGTC 44743 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| || |||||||| ||||| Sbjct 44742 TTGCCCGTAAGCGTCTTGACAAAGATCTGCAT 44711 >seq4656 Length=88185 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 88045 ACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCG 87986 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || | ||||||||||| | || | || ||| ||||| | Sbjct 87985 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 87926 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | ||| || ||||| || || | |||||| | || Sbjct 87925 ATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTT 87867 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || ||||| || || || ||||||||||||| Sbjct 87866 GCCGGTCAGGGTCTTGACGAAGATTTGCATCT 87835 >seq2275 Length=13961 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 236 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 177 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || | ||||||||||| | || | || ||| |||||| Sbjct 176 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 117 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| | | | |||||| |||||| || || | |||||| | || Sbjct 116 AATCTTAGCCTTGACATTGTCGATCGTATCCGACGACTCGACCTCGAGCGTGATCGTCTT 57 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||||||||| Sbjct 56 GCCGGTCAGGGTCTTGACGAAGATTTGCAT 27 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || ||||| |||||||| || || || | || || Sbjct 464 CACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTC 405 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || | ||||||||||| | || | || ||| ||||| Sbjct 404 GAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTG 345 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| || ||||| || || | |||||| | | Sbjct 344 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 286 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||||||||| Sbjct 285 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 255 >seq2248 Length=48530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || || ||||| | || || | || || Sbjct 3861 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 3920 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || ||||| |||||||| | || | || || ||||| | Sbjct 3921 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 3980 Query 39196 ATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | ||| ||| |||||| || || | ||||| | || Sbjct 3981 ATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTT 4039 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 ||||| || || || ||||||||||||| Sbjct 4040 GCCCGTGAGGGTCTTGACAAAGATTTGCA 4068 >seq1990 Length=108331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || || ||| ||||| || || || ||||| Sbjct 52781 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 52840 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 | || || | || || ||||| ||||| ||||| || ||||| |||||||| | || Sbjct 52841 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 52900 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235 | || || ||||| ||| || |||| ||| | | | ||| ||| |||||| | Sbjct 52901 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGA 52959 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 | || | ||||| | || ||||| || || || |||||||||||| Sbjct 52960 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 53006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429521157378797