Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010535.1_202016-07-08] 5,305 sequences; 27,330,976 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq133 127 2e-24 seq38 125 6e-24 seq92 116 3e-21 seq453 113 4e-20 seq98 113 4e-20 seq527 95.1 1e-14 >seq133 Length=54030 Score = 127 bits (140), Expect = 2e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 |||| |||||| | || || || || || || || || || ||||| || || | ||| Sbjct 4068 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4009 Query 24765 ACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || |||| || || || |||||||||||| ||||| || || || || || Sbjct 4008 ACACGATCGACAACGTCAAGACCAA-GATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 3950 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| || ||||| |||||| | | | || | || || ||| Sbjct 3949 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 3890 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || |||||||| | || |||| || || Sbjct 3889 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGG 3843 >seq38 Length=109111 Score = 125 bits (138), Expect = 6e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 24706 GCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGA 24765 ||| |||||| | || || || || || || || || || ||||| || || | |||| Sbjct 53884 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 53825 Query 24766 CACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 ||| | || |||| || || || |||||||||||| ||||| || || || || || | Sbjct 53824 CACGATCGACAACGTCAAGACCAA-GATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 53766 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 ||||| | ||||||||||| || ||||| |||||| | | | || | || || |||| Sbjct 53765 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 53706 Query 24885 TTCAAAAGGAATCGACACTACACTTGGT 24912 | |||||||| ||||| || |||||||| Sbjct 53705 TCCAAAAGGAGTCGACCCTCCACTTGGT 53678 >seq92 Length=70231 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 70016 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 69957 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || ||||| || ||||| ||||| || || || || || Sbjct 69956 GACACGATCGACAACGTCAAGAC-CAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 69898 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || ||||| |||||| | | | | ||||| || Sbjct 69897 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 69838 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| ||||| || ||||||||| |||| Sbjct 69837 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 69802 >seq453 Length=12778 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || |||||||| || || || | Sbjct 255 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 314 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || ||||| || || Sbjct 315 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 374 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||||| |||||| | | | | ||||| || Sbjct 375 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 434 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||||||||| Sbjct 435 ATCCAGAAGGAGTCGACGCTGCACTTGGTG 464 >seq98 Length=66423 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| | || || || ||||| || || || |||||||| || || || | Sbjct 350 GATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTC 291 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || ||||| || || Sbjct 290 GGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 231 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||| || || ||||| |||||| | | | | ||||| || Sbjct 230 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 171 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || |||||||| Sbjct 170 TATCCAGAAGGAGTCGACGCTGCACTTGGT 141 >seq527 Length=9793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 791/1255 (63%), Gaps = 84/1255 (7%) Strand=Plus/Plus Query 138789 CGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC 138848 || ||||| ||| | | ||| || || ||| || |||| |||||| || ||||| Sbjct 6503 CGACTCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTC 6562 Query 138849 GGCGCTCTCGTACGGCAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCA 138907 || ||| ||||||| || || | ||||||||||||| || |||||||| || | Sbjct 6563 GGGCGAATCGAACGGCATCGCCAAGGC-CATGAACGCGTCGGCGAGACCTTGCACTCCGA 6621 Query 138908 CTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATA---GGATAATAGT 138964 |||| ||||| ||||| | || || ||||||| || |||| ||||| |||| Sbjct 6622 TGCCGATGGGGCGGTGGCGGAAGTTGGAG--TTTTGCGCCT-CGATGACGGGATAGTAGT 6678 Query 138965 TTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT- 139023 | || |||||||| ||| || || |||| ||||| | || | | | | | Sbjct 6679 TGACGTCGATGATGCGGTTCAAGTTGAAAGCGACGACCTT-GACGACCTCGTGCAACTTC 6737 Query 139024 TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAAT 139082 | ||| ||||| ||| ||| | || || | ||| ||| | | | | Sbjct 6738 TTAAAGTCGTACACGCC------GTCCTTGATGAAGCTCGGCAA---------CGCGA-T 6781 Query 139083 CGAGGCTATGTTGCACACCGC-CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCAC 139141 |||||| | |||||| || || |||| |||| || | ||| |||| || |||| | Sbjct 6782 CGAGGCCAAGTTGCAGACGGCGCACT-CGTCCGGCGCCGAGTACTCGATGATCTCGGTGC 6840 Query 139142 ACAAATTACTAC-ACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCA 139200 ||| || | || |||||||||| || | ||| | ||| || ||| ||| || Sbjct 6841 ACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCG 6899 Query 139201 TCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAAC 139260 |||||||| |||||| | || |||||||||| || || | || | ||| | | | Sbjct 6900 TCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGT--ACC 6957 Query 139261 AAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGC-----------TCGTA 139307 || ||||| ||| ||| | | ||| | | |||| ||||| Sbjct 6958 AA------AGCTT----TTG-CGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTA 7006 Query 139308 CTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTC 139367 || ||| | | || ||| || || ||| | || || || | | | | Sbjct 7007 TTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGC 7066 Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427 || || | ||| | ||| ||||| |||| ||| ||| |||||| ||||| ||||| Sbjct 7067 GGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 7126 Query 139428 CCACAAAGCGAACAGCAAATCGCG--CGCCTTCTTATCTTCCGAACCCATGTTACGTTTC 139485 ||| | || || | | ||| || ||| ||| | ||| || ||| || | Sbjct 7127 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTT--CCTCCTTGCCGTGGTTC--TTGC 7182 Query 139486 --ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 | || ||||| || || ||||| |||||||| || || || ||||| || | || | Sbjct 7183 GAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 7242 Query 139544 CTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | || ||| |||||||| ||||||| || | | || ||| | || || | || Sbjct 7243 CGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCA 7302 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA--CTGTTGCGAGCT 139656 | || | | ||| ||| ||||| |||| |||| ||| | || ||| Sbjct 7303 TGGGGACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCG---- 7358 Query 139657 CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCG 139716 |||| || || | | | ||||| || ||| | ||||| || | |||| || Sbjct 7359 CGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCA--CG 7416 Query 139717 -CGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | ||| || ||||| || ||| || || |||| |||||||||||| || || | Sbjct 7417 TCTTAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGG 7476 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 ||||||| ||||| | ||| ||||| || || || || ||||| || || Sbjct 7477 ACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGT 7536 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATAC 139894 | | ||||| | | ||||| | | | ||| | |||| || |||||||| | Sbjct 7537 AGCGCTCGGACATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGC 7596 Query 139895 CGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttt 139954 |||| | ||| ||||| ||||| ||||| |||||||| ||| ||| ||||| Sbjct 7597 CGACGGCGACACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAA 7656 Query 139955 tCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 || || | ||| || || || ||| |||||||||| | ||| ||||||| Sbjct 7657 GCAAGTAGGAGCGT--TCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCG 7709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449867766165400