Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010535.1_202016-07-08] 5,305 sequences; 27,330,976 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq527 192 9e-43 seq4 116 6e-20 seq326 113 7e-19 seq47 111 2e-18 seq11 105 1e-16 seq180 87.8 3e-11 seq60 86.0 1e-10 >seq527 Length=9793 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 7263 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 7322 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 7323 TAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 7382 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||| ||||| || Sbjct 7383 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 7442 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 7443 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 7502 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 7503 GCGTTGAAGAGCGTCGGCG 7521 Score = 136 bits (150), Expect = 6e-26 Identities = 296/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||||||| | |||| | | ||||| || ||| Sbjct 6813 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 6872 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| ||||||| |||| ||||| | || || || ||| Sbjct 6873 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 6932 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || | || || |||||| | ||||||| | || || | |||||| Sbjct 6933 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 6992 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | | |||| || | |||| | | ||||| ||| Sbjct 6993 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGG 7052 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | ||| |||||| | | | | || || ||| Sbjct 7053 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 7112 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || ||| |||| || | | |||||||| || || || |||||||||||| Sbjct 7113 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 7172 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || |||||||||||||||||| |||||| Sbjct 7173 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 7232 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 7233 GCGAAGGCTCCGGGACGCTTGTTGCCACC 7261 Score = 102 bits (112), Expect = 1e-15 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | ||| ||||||| ||||||||||| Sbjct 5663 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 5722 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCG 2069368 ||||| || || | ||| ||||| |||||||||||||| || | | | || | Sbjct 5723 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGC-CATCGTTGG 5781 Query 2069369 GGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCG 2069428 | || || ||| || ||| ||||| || |||||| | ||| | |||||||| | Sbjct 5782 GCTCGACA-AGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGG 5840 Query 2069429 CCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || |||||| | | | ||| || | |||||| ||||||||| | | |||||||||| Sbjct 5841 ACAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGA 5899 Query 2069488 T 2069488 | Sbjct 5900 T 5900 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| |||||| ||| | Sbjct 6512 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTACGCGCCTCGGGCGAAT 6570 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 6571 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 6628 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | |||||| || || |||| ||||| |||||| Sbjct 6629 GGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 6688 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 6689 GATGCGGTTCAAGTTG 6704 >seq4 Length=215321 Score = 116 bits (128), Expect = 6e-20 Identities = 145/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 140240 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 140299 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 140300 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 140359 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | |||| | ||||| | ||| |||||||||||||| || Sbjct 140360 TTGTTGTCCCAGTCGTGCATGTCCTTGGACAGGTCCATCTCTTCGGCGGTCCAAAAAGAT 140419 Query 796327 GCCTCGGCCTTTTTGTAC 796344 ||||| ||||| |||||| Sbjct 140420 GCCTCAGCCTTCTTGTAC 140437 >seq326 Length=20357 Score = 113 bits (124), Expect = 7e-19 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 462 CCTTCGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 403 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGA---TCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | || ||| ||| | |||| || ||| || || Sbjct 402 AGGTCTGGATCTCGCGCGACGAGATAGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGC 346 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 || ||| || |||||| || | || |||||||| |||||||| | |||| ||||| Sbjct 345 ACGCTTCGATGGTGATGCGCTCAAAGATATCGTTGACGAACGAGTTGAGGATCAGCATCG 286 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || ||||| | ||||||| Sbjct 285 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 239 >seq47 Length=102454 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCAG 796198 ||| ||||| ||||||| | || ||||| ||| | ||| | | ||| ||||||| Sbjct 28785 AAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGA-GAACCTCTCAACCAAGTTCTCAT 28843 Query 796199 CCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGT 796258 ||||| || || |||||||| |||||||| ||||| |||||||| || |||| Sbjct 28844 TCACGACCCCATCCGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGT 28903 Query 796259 CGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 28904 CGTTGTTGAGCTTGTGGTGCCAGTCGTTGAGGTCGCTGCCGAGGTCGATCTCTTCGGCGG 28963 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 28964 ACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 29004 >seq11 Length=176312 Score = 105 bits (116), Expect = 1e-16 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 1485487 TTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG 1485546 ||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 138276 TTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAA 138217 Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 |||||||||||||| | |||||| ||| | |||| | |||||| || | Sbjct 138216 GTCTGGATCTCGCGCGACGTGATCGTCGCCTTGTGGTTGT-ATTGCGCG--AGCTTGGAC 138160 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||| | |||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 138159 GCCTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCC 138100 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || || | | ||| ||| Sbjct 138099 TTGTTCGAGATACCCGTGTCGGGGTGAACTTGTCTCAACACTTTG 138055 >seq180 Length=42507 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| || ||||||| ||||||| ||| || || ||| | | || Sbjct 108 ACTTGGTGACGGCCTTGGTTCCTTCTGAGATGGCGTGCTTGGACAACTCTCCGGGGAGGA 49 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||||| || | |||||||||||| || Sbjct 48 TGAGGCGGACCGAGGTCTGGATCTCTCG 21 >seq60 Length=88445 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 4561 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGGGT 4620 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| || Sbjct 4621 CGCCACAAGCTCGTCATCCTCGATGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAGCG 4680 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 ||||| ||| ||||||| | | ||| ||| || || || || | || |||||| | Sbjct 4681 CTCCGCAGGACGATGGAAATATTCTCCAGCACCACTCGCTTCGCCTTTGCGTGCAACCAG 4740 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | || Sbjct 4741 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 4800 Query 2019387 ACCGACGCCCAG 2019398 ||||| ||| || Sbjct 4801 ACCGATGCCGAG 4812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915682082953895