Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq13 197 1e-45 seq2 125 8e-24 seq1 125 8e-24 seq795 82.4 8e-11 >seq13 Length=199142 Score = 197 bits (218), Expect = 1e-45 Identities = 151/179 (84%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 63563 ACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAA 63622 |||||||||||||||||| | || |||||||||||||| || || || || |||||||| Sbjct 145330 ACTTTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAA 145389 Query 63623 GCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAAC 63682 || || ||||| || || || ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 145390 ACGCACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAAC 145449 Query 63683 TGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 63741 |||||||||||| ||||| | ||||||||||| |||||||| || || |||||||||| Sbjct 145450 TGCATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 145508 >seq2 Length=722220 Score = 125 bits (138), Expect = 8e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 63569 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 63628 ||| ||||| || | || || || ||||||| || |||||| ||||||||||| || Sbjct 515058 AGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGAGTTAAAGCGCAC 515117 Query 63629 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 63688 || |||||||| || || |||||||| ||||||||||| || ||||| | | ||||| Sbjct 515118 AGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATGTTCCATCGCATC 515177 Query 63689 TTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63742 ||| ||||| | || |||||||||||| ||||| ||||| ||||| || Sbjct 515178 CAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCCTTCGAT 515231 >seq1 Length=970878 Score = 125 bits (138), Expect = 8e-24 Identities = 205/293 (70%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 141671 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 141730 || || || |||||||| ||||| ||||| | |||||| |||| || || ||| || Sbjct 158273 TTGAGCTGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTC 158332 Query 141731 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATA-AGCAGTAGCAGC 141789 |||| || || || |||| | ||||| |||||| || || || | ||| || || || Sbjct 158333 TTCAGCACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGC-GTGGCTGC 158391 Query 141790 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 141849 ||||||||||| || ||||| ||||| || || || || ||||| ||||| || | || Sbjct 158392 GCCGCCACGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAA 158451 Query 141850 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 141909 || ||| || |||||| ||||||| || |||| || ||||| || Sbjct 158452 CGGGATACAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGAT 158511 Query 141910 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG 141962 ||| |||| ||||| || || || || | ||||| ||||| ||||||| Sbjct 158512 ACGACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTG 158564 >seq795 Length=5257 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/114 (78%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 72253 GCGCTCTACCAAACTGAGCTACACGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGA 72312 |||||||||||| |||||| | | || | || |||||||| | | ||||||| Sbjct 4406 GCGCTCTACCAA-CTGAGCCATATC-AGCACATC----TGGAGCGGGCAGCGGGAATCGA 4353 Query 72313 ACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGCA 72365 || | ||||||||| ||||||| ||||||||||| |||||||||||| ||||| Sbjct 4352 ACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGCA 4299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540318580462120