Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq174 138 4e-28 seq4 102 3e-17 seq15 87.8 7e-13 >seq174 Length=42168 Score = 138 bits (152), Expect = 4e-28 Identities = 233/333 (70%), Gaps = 16/333 (5%) Strand=Plus/Minus Query 27118 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 27177 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 27178 AACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 27237 | | ||| |||| |||||| ||| | |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 27238 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 27293 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 27294 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGGATCAACGCCACCTGCTCCGGTACCGT 27352 || ||| ||||| | ||| ||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 27353 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 27412 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 27413 CGCTGAACGGGATTATTTCATCCTCAGAGAACG 27445 |||| ||||||||||||||| ||||||||| || Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAGCG 26811 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 20611 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 20670 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 20671 CCAGCAAGGGCCACCATAT 20689 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 >seq15 Length=176901 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 57059 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 57118 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 123890 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 123831 Query 57119 TCTTTCGGAGA-AACATTCTGCCCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 57174 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 123830 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 123775 Query 57175 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 57234 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 123774 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 123715 Query 57235 TTCAAGGATAACCCATGCATCATC 57258 ||| || | |||||||| ||||| Sbjct 123714 TTCCAGAACGACCCATGCGTCATC 123691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194878059892112