Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq174 138 4e-28 seq4 102 3e-17 seq9 96.9 1e-15 seq15 87.8 7e-13 >seq174 Length=42168 Score = 138 bits (152), Expect = 4e-28 Identities = 232/331 (70%), Gaps = 16/331 (5%) Strand=Plus/Minus Query 27650 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 27709 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 27710 AACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 27769 | | ||| |||| |||||| ||| | |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 27770 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 27825 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 27826 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGGATCAACGCCACCTGCTCCGGTACCGT 27884 || ||| ||||| | ||| ||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 27885 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 27944 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 27945 CGCTGAACGGGATTATTTCATCCTCAGAGAG 27975 |||| ||||||||||||||| |||||||||| Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAG 26813 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 21120 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21179 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 21180 CCAGCAAGGGCCACCATAT 21198 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 >seq9 Length=205880 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 12767 TTTCATTCTGAACCATGAGTACGATACTAAAGCACTTGCAAAAACTTTCAGTTCAACCAT 12826 |||| | ||||||||| |||| || ||| ||||| |||||| ||||||||| | Sbjct 173488 TTTCTGTTTGAACCATGGGTACAATGTTAACTGACTTGATAAAACTGTCAGTTCAAAT-T 173546 Query 12827 AATACGTACTGAAAGTACGAAAAAGGA--TATTCCT---ATGCAA-AATCTTGATGAGCC 12880 || | ||||||||||| | ||| | ||| | || || || |||| | Sbjct 173547 AAAGTGAACTGAAAGTACTATTGAGGGGGTTTTCATGTCATTCATTAACCTTG------C 173600 Query 12881 GATTAAAGGTGTCGGCATCCCTGAAGTTGCGAAGGCTTGTGGAGTTAGCGAAAGGGCTGT 12940 ||||| ||| || | ||||||||||||| || |||||| | || ||| || || Sbjct 173601 AATTAAGTCTGTGGGAGTTGCTGAAGTTGCGAAAGCGTGTGGAATCAGTCCAAGAGCGGT 173660 Query 12941 CTATAAGTGGCTCAAAAACGGCTTCCTCCCTAAGACTGAGTTTTTTGGGAAAACTAAATA 13000 ||| ||||||||||| || || | || ||||| || ||||||| |||| |||| |||| Sbjct 173661 CTACAAGTGGCTCAACAAGGGTTCACTTCCTAAAACAGAGTTTTATGGGGGAACTCAATA 173720 Query 13001 CGCA 13004 ||| Sbjct 173721 TGCA 173724 >seq15 Length=176901 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 58018 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 58077 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 123890 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 123831 Query 58078 TCTTTCGGAGA-AACATTCTGACCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 58133 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 123830 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 123775 Query 58134 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 58193 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 123774 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 123715 Query 58194 TTCAAGGATAACCCATGCATCATC 58217 ||| || | |||||||| ||||| Sbjct 123714 TTCCAGAACGACCCATGCGTCATC 123691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197207483700096