Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq4 113 9e-21 seq1 87.8 4e-13 >seq4 Length=447486 Score = 113 bits (124), Expect = 9e-21 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 20891 AAAATCCACCGCCATTCTATCGCCACTCGAAAACGAGGCAACAAAAAGGCCACTCGAGAG 20950 ||||| |||||||| | || |||||||| ||| | ||||||| || || | | Sbjct 299395 AAAATGCACCGCCACTTTACCGCCACTCAGAAATTCAGATACAAAAAAACCGCTTCAATG 299336 Query 20951 AGTGGCCTAACTGTATGTATTTACTACTTAAATTTGGTGGCCCCTGCTGGACTTGAACCA 21010 | ||| ||| | ||||||||| | |||||||||||||||||||||| |||||||| Sbjct 299335 TGCGGCTTAAGTATATGTATTTTATGACTAAATTTGGTGGCCCCTGCTGGGTTTGAACCA 299276 Query 21011 GCGACCAAGCGATTATGAGT 21030 |||||||||||||||||||| Sbjct 299275 GCGACCAAGCGATTATGAGT 299256 >seq1 Length=970878 Score = 87.8 bits (96), Expect = 4e-13 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 28522 AAAGCGTGCCGTTGATTTGGCCGTTGACGTTAAGGGCGCTTCTGCGCCCTCTCGGAGTTC 28581 ||| |||||||||||||||| |||| |||||| ||| | ||| ||||||||||||| Sbjct 605956 AAAACGTGCCGTTGATTTGGGTTTTGAATTTAAGGACGCGACCGCGTCCTCTCGGAGTTC 605897 Query 28582 TGTCAATAACTGTACGGGAAGCGAA 28606 |||||||||||||| || |||||| Sbjct 605896 TGTCAATAACTGTATGG--AGCGAA 605874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97867797515108