Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq174 113 1e-20 >seq174 Length=42168 Score = 113 bits (124), Expect = 1e-20 Identities = 1044/1668 (63%), Gaps = 93/1668 (6%) Strand=Plus/Minus Query 14074 ATAAGCAACACCCTGATATTCAAACAGT----------AGCCACCTTCGGGTGGCttttt 14123 ||||| || | ||||||||| |||||| | |||||||| ||||| ||||| Sbjct 7905 ATAAGAAAAATCCTGATATTTTAACAGTGACTAAATGAAACCACCTTCCGGTGG-TTTTT 7847 Query 14124 ttATGGGCGCAATATGG--CTAC----AGATAAAGTGTTAAAGGGCCGCAAGGGCGGCAG 14177 ||||||| | |||||| || | || | ||| | ||||| | ||||| || | Sbjct 7846 TTATGGGGGAAATATGCGTCTTCTCGAAGGTGCCGTGATTCAGGGCAGTAAGGGTGGTGG 7787 Query 14178 CTC---CAGTTCCCGAACTCCTACCGAACAGCCTGATGATCTGCAATCTGTAGCGAAGGC 14234 | ||| | | ||||| |||||||| |||||||||| ||| | || || Sbjct 7786 CGGTGGCAGCGCTCATACTCCGGTTGAACAGCCAGATGATCTGCTGTCTATCGCAAAATT 7727 Query 14235 AAAAATCCTCGTTGCGCTTGGGGAAGGTGAGTTTGCAGGGC-AGCTCACCGGCAAAGATA 14293 |||||| || | || | || |||||| || ||||| | | |||| || | | Sbjct 7726 AAAAATGCTGCTGGCTATATCAGAGGGTGAGATT-CAGGGTGATTTAACCGCGCAACAGA 7668 Query 14294 TCTACCTGGACGGAACAGCGCTGGAGAATGCTGACGGCTCCCAAAACTTCAGCGGGGTAA 14353 | |||||| ||| || ||| ||| | |||||| || | ||||||| ||| ||| Sbjct 7667 TTTACCTGAACGACACCCAATTGGCGAACGAAGACGGCACCTACAACTTCACCGGCGTAG 7608 Query 14354 CGTGGGAGTTTCGCGCGGGAACTCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCG 14413 |||||| | || || || |||| || | |||||||||||||| || | || Sbjct 7607 TGTGGGACTGGCGTAAAGGTACGCAGGACCAGACCTATATTCAGGGTATGCCTGAAGTCG 7548 Query 14414 AAAACGAGATCAGCGTAGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTA 14473 | || ||| | || || || ||| | || | |||||||| ||| ||||| Sbjct 7547 ATAATGAGCTTTCTGTTGGGGTTGCAGTAACGCAGGCAATCGCCTGGACCCGCCAGTTTA 7488 Query 14474 CCAATACGCAGCTTTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTTCAAACAGG 14533 ||||| | || || |||||| | || | | ||| | || | ||| Sbjct 7487 CCAATCTGACACTGGATGCCGTTCGCATTAAGCTGAGCTTGCC---GGTTCAGTATCAGT 7431 Query 14534 AGGACGAC---GGCGATCTGGTGGGTTACTCGGTCA---ATTATGCAATTGACCTGCAGA 14587 | | ||| |||||| |||| ||| | || | | ||||| ||||| || | Sbjct 7430 ATAAAGACAATGGCGATATGGTCGGTACC---GTAACGCAGTATGCCATTGATCTCTCAA 7374 Query 14588 CGGACGGCGGCGCATGGCAGACGGTACTCAATACCAGCGTGACCGGAAAAACGACGTCTG 14647 | ||||| || ||||| ||||| | | || | ||| ||||| ||||||| Sbjct 7373 CTGACGGTGGTTCATGGGTCACGGTGGTGGACGGAAGGTTTGACGGTAAAACTACGTCTG 7314 Query 14648 GTTATGAGCGCAGCCATCGTATTGATTTACCGCAGGCTGGCAGCACT---TGGACAATCC 14704 ||| ||||| ||||| || || ||||| | || || || ||| || || Sbjct 7313 AATATCAGCGCGATCATCGCATCGACTTACCTAAAGC---CACATCTGGCTGGTCAGTCA 7257 Query 14705 GCCTGCGTAAGATTACCTCTGACGCCAACAGCG-CGAAGATCGGCGACACGATGACGCTG 14763 | |||||| |||||| |||| || || | | ||| | || | | | | Sbjct 7256 GGGTGCGTAGAATTACCGCTGATTCCT-CATCATCAAAGCTTATTAACGCTTTCAAAGTT 7198 Query 14764 CAGAGCTTCACTGAGGTGATTGACGCCAAGTTACGATATCCAAACACAGCGCTACTCTAC 14823 ||| | ||||| || ||| ||| | || || || || || ||||| || || Sbjct 7197 TTTTCGTTCGCAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTAT 7138 Query 14824 ATCGAATTCGATTCAAGTCAGTTTAACGGCTCTATCCCGCAGA-TCTCCTGCGAGCCCCG 14882 ||||| | ||| | |||||||| | ||| || | | | | | | ||| |||| Sbjct 7137 ATCGAGGTTGATGCCAGTCAGTTCAGCGG-TCAGGCACCAAAAGTAACGTGCAAGCCAAA 7079 Query 14883 CGGCCGTGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTAC 14942 || || | | ||||| || ||||| || |||| | || | |||| ||| || Sbjct 7078 AGGGCGGCTGGTTCGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAAC 7019 Query 14943 ATGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGATCT 15002 ||| |||| || || | || | || |||||||| || |||||||| || || || Sbjct 7018 GTGGCAGGGTGATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCT 6959 Query 15003 GGTTGTTTCTGACCGGTTCGGCCTCGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAA 15059 ||| | | | || || | ||| ||| | || ||| | || || || || Sbjct 6958 GGTGCTGGATAAAATATTTGGTATGGGGACGCGTGT---CGATGCCACCATGATCGACAA 6902 Query 15060 ATGGACGCTTTATCAGG-TTGCCCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGG 15118 ||| |||||| ||| || | ||||| || ||||||||||| | |||||| ||| | Sbjct 6901 GTGGGAGCTTTA-CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCG 6843 Query 15119 GCAACGGTACCGAACCACGTTATACCTGCAACGTGTACATCCAGGACCGAAACGACGCTT 15178 | ||||| ||| || | |||||| ||||||| ||| ||| | | || || | Sbjct 6842 G-AACGGAGCCG-----CGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGT 6789 Query 15179 ATACAGTCCTGCGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGGAGGCGATC 15238 |||| || ||| || ||||||| |||||||||||||| |||| |||||| | | Sbjct 6788 ATACCGTTCTGAAGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCC 6729 Query 15239 AGA---TCGT---TGCT--CTGGCCG--------ATATGCC-----CCGAGATGTTGATT 15277 ||| |||| |||| | |||| | || | | |||||||||| Sbjct 6728 AGATTTTCGTCAATGCTGACGTGCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATT 6669 Query 15278 ACAGCTA-CACGCGCGCCAACGTTGTTGGCGGTCGCTTCACCTATTCAAGCAGCACCACG 15336 | || ||||| ||| ||||| ||| || ||||||||| | || ||| | Sbjct 6668 TCGTTTACCACGC-CGCAAACGTCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTAC 6610 Query 15337 AAAACCCGCTACACCACAGCGCTGGTTTCA--TGGTCAGACCCGGGTAACGCTTATGCCG 15394 |||| ||||||||| || | | | || ||||| || ||| |||| |||| | | Sbjct 6609 AAAAATCGCTACACCTCATGCCAG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGG 6552 Query 15395 ACGCGATGGAGCCGGTATTTGAGCAGGCGCTGGTAGCGCGATACGGCTTCAATCAGCTGG 15454 || | | ||| || | || | |||||| ||| |||||| | | | || Sbjct 6551 ACACCGTAGAGGGCGTTTACGATTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGA 6492 Query 15455 AAATGACAGCCATCGGCTGCACCAGGCAGTCAGAAGCGAACCGAAAGGGGCGCTGGGGCA 15514 | || || ||||||||||| ||| || || | || |||||||||| || Sbjct 6491 GCCTCACGGCTATCGGCTGCACGTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCA 6432 Query 15515 TTCTCACCAACAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTC 15574 ||||| |||| ||| ||| | ||||| || | ||||| ||||| || | |||| Sbjct 6431 TTCTCTCCAATGCCAAAGATGGTACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTC 6372 Query 15575 CGCAGCCTGGCT-ACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGC 15633 | | || ||| | ||||||| ||||| ||| | | ||| ||| | ||| Sbjct 6371 C-TATCCCCGCTGAAATCATCGGTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGC 6313 Query 15634 GGCCGCATCAGCGCCGTTAACGG---TCGCGTTATCAAACTTGACCGC 15678 ||||||||||| | ||||| || |||||| | ||| |||||| Sbjct 6312 GGCCGCATCAGTTCTGTTAATGGCCTGCGCGTT---ACACTCGACCGC 6268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130271746558314