Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq174 325 1e-84 >seq174 Length=42168 Score = 325 bits (360), Expect = 1e-84 Identities = 521/743 (70%), Gaps = 31/743 (4%) Strand=Plus/Minus Query 8425 GGGTGAAAATATGGCTACGTTGCGCGAACTGATCATCAAAATATCTGCAAACTCTCAG-T 8483 ||||||||| ||||||||| |||||||||| || || ||||| ||||| ||||| ||| | Sbjct 14165 GGGTGAAAA-ATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCT 14108 Query 8484 CATTCCAGTCTGAAATTTCTCGTGCTTCAAGAATGGGGAATGACTATTACCGGGTAATGC 8543 | || ||| ||| ||| | || || || | ||||| |||||||||||| ||| Sbjct 14107 CTTTTCAGAGTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGG 14048 Query 8544 AGACTGGAGGACGCCAATCGGCCGCAGCTTCGCGTGAAACTCAGCGTGCCTT---GG--C 8598 || ||||| ||| | | || ||||| ||||||||| ||||| || | || | Sbjct 14047 AGCAGGGAGGCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACC 13988 Query 8599 TGAG---GTAACTAGTCAAATAAACACCGCGAAGGCCTCAGCACTGGGAATGGCTGGTGC 8655 |||| | | || || || || | || | | || |||| ||| | || | Sbjct 13987 TGAGTGAGCAGCTTGT---AT-----CCACTAAAGAGACGGCGCTGGAGATGACCGGCGT 13936 Query 8656 ATTTNNNNNNNNNNNNNNGACTGGTCATCTTATATCGCTGGCCGATGAATGGAGCTCTGT 8715 || | || || || | |||| || | |||| | || Sbjct 13935 CTTCGCCGGCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGT 13876 Query 8716 TAATGCCAGGCTAAAGCAGGCTTCCCAGTCGTCAGATGATTTCA---CGGAGTCCCAGCG 8772 || ||| | || ||||||||||| ||||| ||| || |||| ||| | ||| Sbjct 13875 GAACGCCCGCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTG---CAGAA 13819 Query 8773 GGCGCTGATGGATATTAGCCAGCGAACCGGAACCGCCTTCTCTGATAATGCGAGTCTTTT 8832 ||||||||||||| |||||||| ||||| || | || || ||||||| ||||| Sbjct 13818 ATCGCTGATGGATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTA 13759 Query 8833 TGCGCGTTCAGCCGCTTCTATGCGTGAATATGGCTACAGTTCAGAAGAGGTTCTGAAGGT 8892 ||||||||| || ||||| ||||| |||| || ||| | | | || || || ||||| Sbjct 13758 TGCGCGTTCCGCTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGT 13699 Query 8893 AACCGAGGCTATATCAACAGGGCTTAAGCTGTCAGGCGCAAGCGCGTCTGAAGCGAGT-- 8950 |||||||| |||||||||||||||||||||||||||| || ||||||| || Sbjct 13698 TACCGAGGCAGTATCAACAGGGCTTAAGCTGTCAGGCGCGAGT---TCTGAAGAAAGCAG 13642 Query 8951 -TCGGTAATCACGCAGTTCAGCCAGGCTCTGGCGCAGGGTGTTCTTCGAGGCGAGGAATT 9009 || || ||||| |||||||||||||| ||||||||||| || ||||| || ||||| || Sbjct 13641 CTCTGTTATCACCCAGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTT 13582 Query 9010 TAACTCCGTCAACGAAAACGGTGATCGAGTTATCCGTGCTCTTGCCGCAGGGATGGGTGT 9069 ||| | || ||||| |||||||| |||||||||||||| ||||| || ||||| || Sbjct 13581 CAACGCAGTTAACGAGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGT 13522 Query 9070 AGCTCGTAAAGATCTGAAGGCAATGGCCGATCAGGGGATGCTAACCGCAGATAAAGTTGT 9129 || || ||||| || ||||| |||||||||||||| || ||| |||||||| || Sbjct 13521 TGCCCGCAAAGACCTTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGT 13462 Query 9130 CCCGGCCCTGATAAGTCAACTTG 9152 || ||||||| || || |||| Sbjct 13461 GCCAGCCCTGACCAGCCAGCTTG 13439 Score = 127 bits (140), Expect = 5e-25 Identities = 607/947 (64%), Gaps = 61/947 (6%) Strand=Plus/Minus Query 15774 TTCACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAA 15833 ||| | ||||| || || ||||||||||||||| || ||||||||||| || |||| Sbjct 7191 TTCGCAGAGGTCATCGACAGCAAACTGCGCTACCCCAATACCGCGCTGCTGTATATCGAG 7132 Query 15834 TTCGACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCA--TGCGAACC----GCGC 15887 | || | || ||||||| ||| || | | |||| | | ||| | || | || Sbjct 7131 GTTGATGCCAGTCAGTTCAGCGG-TC-AGGCACCAAAAGTAACGTGCAAGCCAAAAGGGC 7074 Query 15888 GGCCGCGTTATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACA 15947 ||| | ||| ||||| || ||||| || |||| | || | |||| ||| || Sbjct 7073 GGCTG-GTT---CGCGTGCCGACAACCTATGATCCTGTTTCACGTAGTTATGCCGGAACG 7018 Query 15948 TGGACCGGTGCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTG 16007 ||| |||| || || | || | || |||||||| || |||||||| || |||||| Sbjct 7017 TGGCAGGGTGATTTCAAATACGCCTATACCGATAACCCGGCATGGATTTTCTATGACCTG 6958 Query 16008 GTTGTTTCTGACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGA--AT-ATTGATAAA 16064 || | | | || || | ||| ||| | || ||| | || || || || Sbjct 6957 GTGCTGGATAAAATATTTGGTATGGGGACGCGTGT---CGATGCCACCATGATCGACAAG 6901 Query 16065 TGGACGCTTTATCAGG-TTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGG 16123 ||| |||||| ||| || | ||||| || ||||||||||| | |||||| ||| || Sbjct 6900 TGGGAGCTTTA-CAGTATTTCGCAGTACTGCGATCAGATGGTGTCTGACGGCGCAGGCGG 6842 Query 16124 CAACGGTACAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTA 16183 ||||| | || || | |||||| ||||||| ||| ||| | | | || || || Sbjct 6841 -AACGG-----AGCCGCGCTTTACCTGTAACGTGTTCATACAGAGTCAGCAGGATGCGTA 6788 Query 16184 CACAGTCCTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA 16243 || || ||| || |||| || || ||||||||||| || | ||||||| || Sbjct 6787 TACCGTTCTGAAGGACATTGCGGCGATATTCCGTGGCATTACGTTCTGGGGCAACAGCCA 6728 Query 16244 GATTGTGGCCCTGGCTGACATGCCGC---------------GC------GATGTTGATTA 16282 |||| | | | |||||| |||||| || |||||||||| Sbjct 6727 GATTTTCGTCAATGCTGACGTGCCGCAGGTTGACTCTGACGGCAACGTTGATGTTGATTT 6668 Query 16283 CAGCTA-TACGCGCGCTAACGTTGTTGGCGGTCGCTTCACCTATTCGAGCAGCACCACGA 16341 | || |||| ||| ||||| ||| || ||||||||| || || ||| | | Sbjct 6667 CGTTTACCACGC-CGCAAACGTCATTGATGGGTTGTTCACCTATGCGGGCGGCAGCTACA 6609 Query 16342 AAAGCCGCTACACCACAGCGCTGGTTTCA--TGGTCAGACCCGGGTAACGCTTATGCCGA 16399 ||| ||||||||| || | | | || ||||| || ||| |||| |||| | || Sbjct 6608 AAAATCGCTACACCTCATGCCAG--TCCAGCTGGTCCGATCCGATTAACCATTATTCGGA 6551 Query 16400 CGCGATGGAACCGGTATTTGAGCAGGCGCTGGTGGCGCGGTACGGCTTCAATCAGCTGGA 16459 | | | || || | || | ||||| ||| |||||| | | | || Sbjct 6550 CACCGTAGAGGGCGTTTACGATTCCGATCTGGTACAGCGCTACGGCGTTAGGGAAATGAG 6491 Query 16460 AATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGCGAACCGAAAGGGGCGCTGGGGTAT 16519 | || || ||||||||||| ||| ||||| | || |||||||||| || Sbjct 6490 CCTCACGGCTATCGGCTGCACGTCACAGAGCGAGGCACATCGGCGCGGGCGCTGGGCCAT 6431 Query 16520 TCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGATGTCGGGCTGGACGGAAACATTCC 16579 |||| ||||| ||| ||| | ||||| || | ||||| ||||| || | ||||| Sbjct 6430 TCTCTCCAATGCCAAAGATGGTACGGTTTCATTCGGCGTCGGACTGGATGGTTATATTCC 6371 Query 16580 GCAGCCGGGCT-ACATCATCGCCGTGGCAGACGAGCTGCTTTCCGGAAAGGTTATGGGCG 16638 | || ||| | ||||||| ||||| ||| | | ||| ||| | |||| Sbjct 6370 -TATCCCCGCTGAAATCATCGGTGTGGCGGACCCATTCCGAAGCGGGAAGCAGAACGGCG 6312 Query 16639 GCCGCATCAGCGCCGTTAACGG---TCGCGTTATCAAACTTGACCGC 16682 |||||||||| | ||||| || |||||| | ||| |||||| Sbjct 6311 GCCGCATCAGTTCTGTTAATGGCCTGCGCGTT---ACACTCGACCGC 6268 Score = 93.3 bits (102), Expect = 1e-14 Identities = 392/608 (64%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 5652 GGCTGAGGTAAAGGGGATCAGCGGCAGAGAGCAGCTTTCAGGCGGCGCGGAAACGGCGCA 5711 |||||| || || || |||||| || | |||| | | |||| |||| | | Sbjct 16493 GGCTGAAGTTAAAGGCATCAGCAGCCGGGAGCTCATGACCTCGGGCGTTGAAAAACCAGA 16434 Query 5712 GGCAACGATTCGCGTCTGGATGCGCTTCAGGTCAGAGCTGAATGCCTCTTCTCGTCTGGA 5771 ||||||||| ||||||||||| || ||||| | || | | || | || || ||| | Sbjct 16433 GGCAACGATACGCGTCTGGATTCGTTTCAGAACTGATGTAACAGCTGCCTCCCGGCTGAA 16374 Query 5772 AGTGC-TCAGCGGCCCGTATAAAGGTCAGGTGCTAAATATCATCGGTCCTCCTGTAGCAA 5830 | ||| | | || |||| ||| || ||| || || | | || ||| || | Sbjct 16373 A-TGCATTACTGGTCCGTTTAAGGGAATGGTTCTTGATGTGACAGGAGAGCCTATACCGG 16315 Query 5831 ATGCGACCGGCACTCGCCTGGAAATTCTTTGCAAAACGGGAGCTGAAAA-ATGATTGAGA 5889 | || | | |||| || |||||||| || || ||| | |||| | ||||| || Sbjct 16314 ACGCCAGAGCGACTCAGCTCGAAATTCTCTGTAAGCAGGGGG-TGAAGACATGATAACGA 16256 Query 5890 CGAGCCTCGATTTTTCCGGGTTAAATGACATTGCAAAGGATCTGGAGGCGCTTAGCCGCG 5949 | ||||||||||| || || || ||| | | ||| || ||| || ||| | Sbjct 16255 CCAGCCTCGATTTCTCTGGTTTGTCTGATTTATCCCGGGACCTTGAGATCCTCAGCAAAG 16196 Query 5950 CTGAAAACAATAAGGTTCTTCGTGATGCCACCCGCGCCGGCGCGGAAGTGCTTAAGGAAG 6009 | || | || ||||||| | ||| | | ||||| || | ||| ||||||||| Sbjct 16195 CAGAGAGCAGGGCGGTTCTTAATCGTGCGGTCAGGGCCGGAGCCGGTGTGGTTAAGGAAG 16136 Query 6010 AAGTGATCGACCGCGCTCCGGTGCGTACCGGGAAACTGaaaaaaaaCGTGGTGGTGGTGA 6069 || | ||| || || || | | ||| || || || || | || ||| | Sbjct 16135 AAATTATCAACACTGCACCAGAAAAGAGCGGAAAGCTTAAGCGGAATATCGTTGTGCTCT 16076 Query 6070 CCCAAAAAAGC-CGTCGCCGCGGGGAAATTTCTTCCGGCGTCCATATTCGTGGCGTTAAC 6128 || ||| | || || || || || || ||||| |||||||||||| || Sbjct 16075 CCGGTAAAGGTGCGCCGG-GCACGGCAACGGCT---GGCGTGCATATTCGTGGCAGAAAT 16020 Query 6129 CCGCGC-ACCGGAAACAGCGATAACACGATGAAGGCTAATAACCCGAGAAACGCCTTTTA 6187 || ||| | ||| ||||| || | ||||||||| | ||| |||| || |||||||| Sbjct 16019 CC-CGCTAACGGCAACAGTGACACCACGATGAAAACGAATTCTCCGAACAATGCCTTTTA 15961 Query 6188 CTGGCGATTCGTTGAGCTTGGTACCGCGAACATGCCTGCACATCCGTTTGTGCGACCCGC 6247 |||||| || | ||| ||||| | || |||||||| ||||| ||||| || || || Sbjct 15960 CTGGCGTTTTCTGGAGGAGGGTACATCAAAGATGCCTGCTCATCCTTTTGTCCGGCCAGC 15901 Query 6248 TTACGATA 6255 | ||||| Sbjct 15900 ATTCGATA 15893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127011193178732