Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq174 129 2e-25 seq4 96.9 9e-16 >seq174 Length=42168 Score = 129 bits (142), Expect = 2e-25 Identities = 244/357 (68%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 21394 ATGCCATCACGAATACCCCGCGCCTGTCGTAAGCGTGGATGTGCAGGCA--CAACAACAG 21451 |||||| ||||||||| | || || || |||| ||| |||| || | ||||||| | Sbjct 23170 ATGCCACAACGAATACCGAGAGCATGCCGCAAGCATGG--GTGCGGGAAGACAACAACTG 23113 Query 21452 ACAGTTCGGGTTACTGCGATAAGCATCGCGGTGAAGGCTGGGTGCAGCACCAGCGCGGAC 21511 | | || |||||||| | | | ||| | ||| |||||| ||||| || ||||| | Sbjct 23112 ATCGCTCAGGTTACTGTGCTGACCATATCAATGAGGGCTGGCAACAGCATCAACGCGGTC 23053 Query 21512 TGAGCCGCCACCAGCGTGGCTATGGCTCAAAATGGACGGTGATTCGTGCCCGTATTCTGA 21571 ||| | || |||| || |||||| ||||| || | ||||| | |||| Sbjct 23052 AAAGCAGGCATGAGCGCGGATATGGCAGTCAATGGGATGTCAGACGTGCGAGAGTTCTTG 22993 Query 21572 AGCGCGATAAAGGTCTGTGTCAGTTGTGTCTCCGTGTCGGTGTGGTGAGCGAGGCGAAAA 21631 |||||||| || |||||| ||| || || || | | || || | Sbjct 22992 AGCGCGATCGGCACCTCTGTCAGGAGTGCCTGCGAAAGGGCAGACCCACAGCAGCTAAGA 22933 Query 21632 CTGTCGACCACATCATCCCGAAAGCGCATGGCGGAACAGACGCAGACAGCAACCTGCAGA 21691 | || ||||||||||| |||||||| ||||| || || || | ||||||||||| ||| Sbjct 22932 CGGTTGACCACATCATTCCGAAAGCACATGGGGGTACCGATGACGACAGCAACCTTCAGG 22873 Query 21692 GTCTGTGCTGGCCCTGCCACAAAGCGAAAACAGCGCGCGAACGAATCAGGTGATAAT 21748 | |||||||||| |||||||| || || ||||| | || || ||| ||||||| Sbjct 22872 CTTTGTGCTGGCCGTGCCACAAGGCAAAGACAGCCAGAGACAGATTCAAATGATAAT 22816 >seq4 Length=447486 Score = 96.9 bits (106), Expect = 9e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 17158 GGCCCTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 17217 ||||| |||||| |||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 17218 CCAGCAAGGGCCACCA 17233 |||||| ||||||||| Sbjct 299286 CCAGCAGGGGCCACCA 299301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136108105110186