Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq1 304 3e-78 seq174 113 1e-20 >seq1 Length=970878 Score = 304 bits (336), Expect = 3e-78 Identities = 652/969 (67%), Gaps = 4/969 (0%) Strand=Plus/Plus Query 19142 GGGCGATGTTTGCTTTCAATATAGATTCTGCCTATATATTCACCGAGAACACCAATCCCG 19201 || |||| |||| |||| || || || | ||| ||||||||||| || || |||||||| Sbjct 786017 GGACGATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCCAGCACGCCAATCCCA 786076 Query 19202 ATCAGTTGCACTCCACCCAAGAAA-AGTATTGATACAAGCAGGGAGGGATACCCGCGTAC 19260 || || || || ||| |||||||| || | || || || | ||||| || || | || Sbjct 786077 ATAAGCTGAACGCCA-CCAAGAAACAGCACGGAAACCAGAATAGAGGGGTAGCCTGGCAC 786135 Query 19261 TGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCT 19320 ||||||||||| | | | || | |||||||| ||||||| ||| | | Sbjct 786136 CGGGTTACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATATAGAAAAGCTAGCGA 786195 Query 19321 TGCAACAAACAAACCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGAT 19380 || || | ||||| | ||| | ||| | |||||| |||| || || || || | Sbjct 786196 GGCCACCAGAAAACCCAGATATGACCAGATGCGAAGTGGAACCGTAGAGAATGAGGTCAG 786255 Query 19381 ACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACGCG 19440 || ||||| || |||||||| | |||||||| ||||| | ||| || | || Sbjct 786256 TCCCTCCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACTGTGGCCCGCGATCCG 786315 Query 19441 CTCTGCGCGTACATATTCAACGACATCTGTCTGACCACCCACCCAGCTCAGTATGCCTTT 19500 ||| | || |||||||| |||| ||| |||| || || ||||| ||||| || || || Sbjct 786316 CTCAGTACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCAACTCAGAATCCCCTT 786375 Query 19501 CATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAG 19560 ||| || ||||| ||| |||| ||| ||||| ||||| ||||| ||||| ||||| || Sbjct 786376 CATAAAGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAACTTCACGCGACATCAG 786435 Query 19561 TCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATA 19620 || ||||| |||||||| || || |||| || ||| || |||| || | || || Sbjct 786436 CCGGAAATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCTGTTATGCAGTTTGTA 786495 Query 19621 GAACCACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGC 19680 ||||| || || || ||||| || | ||||| | | ||| || || || Sbjct 786496 AAACCAGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCTGTCCATCCGCTTGGC 786555 Query 19681 AAGCACCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGG 19740 ||| || || |||||||| ||| ||||||| | || | | |||||| || || || Sbjct 786556 AAGAACAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGGGATAACAGTGATGGG 786615 Query 19741 ATCTTGCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGC 19800 || || | || |||||||| || || || ||||||||| |||| || | || || Sbjct 786616 GTCCTGTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGCGGCTTCCAGGCCGGC 786675 Query 19801 AAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAGCGGAACAACTAGTGGGTC 19860 ||| | || ||||| || || || || || |||| ||||| || || || || || Sbjct 786676 AAACAGCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCTAAGTACCAGCGGATC 786735 Query 19861 TGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAA 19920 | ||| | |||| | | | || |||||| | || || |||| | || Sbjct 786736 GCTCTGACTCAGTTGGGTAATCAGCGCATGCGTTGCATCTGTGCTGCCATCATCAACAAA 786795 Query 19921 TACAATTTCTACTTCATATGGCT-TCAACTCTTGGAATTCACGTACCGTTTTATAGAAAA 19979 ||||| || || | | |||| || | ||| ||| | |||| | ||| |||| Sbjct 786796 AACAATCTCAACCTGCCA-GGCTGCCAGCGCTTCATATTTTCTGACCGCGTCATAAAAAA 786854 Query 19980 CAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATC 20039 ||| || | || |||||||| || || || || || ||||| ||||||||| | | Sbjct 786855 GAGGGATGACCTCCTCTTCATTAAATACCGGTACCACCAGAGAGATTTTCATTATTCTCC 786914 Query 20040 CCTAAAGACAATGAACTTTGAATAGACGAAACCGCACACCAGACTGATGGCGGAGAAGGT 20099 |||| || || || ||| | | || || ||| |||||||||| || || |||| Sbjct 786915 TTTAAATACGATAAAGCGGGAAAAAAGAAAGCCACACGCCAGACTGATAGCCGATGAGGT 786974 Query 20100 GATAAGAGT 20108 ||| || || Sbjct 786975 GATCAGCGT 786983 >seq174 Length=42168 Score = 113 bits (124), Expect = 1e-20 Identities = 238/355 (67%), Gaps = 0/355 (0%) Strand=Plus/Minus Query 36666 ATGCCCCCTCGAACTCCAAAAGCCTGCCGCGTTCGCGGCTGCCGTAATACCACGACAGAC 36725 ||||| | |||| || | ||| |||||| | || ||| | || || || || || Sbjct 23170 ATGCCACAACGAATACCGAGAGCATGCCGCAAGCATGGGTGCGGGAAGACAACAACTGAT 23111 Query 36726 CCGTCAGGCTACTGCGAAAGCCACAAAAGCGAAGGCTGGAAGCAATACAAACCTGGACAA 36785 | ||||| ||||| | ||| | | || |||||| | || | ||| || ||| Sbjct 23110 CGCTCAGGTTACTGTGCTGACCATATCAATGAGGGCTGGCAACAGCATCAACGCGGTCAA 23051 Query 36786 TCCCGTCATCAGCGCGGTTATGGTTCTAAGTGGGATGTTATCCGTGTGCGTGTGCTGCAA 36845 | | ||| ||||||| ||||| | | |||||||| | |||| | | || || | Sbjct 23050 AGCAGGCATGAGCGCGGATATGGCAGTCAATGGGATGTCAGACGTGCGAGAGTTCTTGAG 22991 Query 36846 CGTGACAAAGGCCTGTGTCAGTTATGTCTGCGTGCTGGTGTGGCGCGTGAAGCGAAAACC 36905 || || ||| |||||| || ||||| || | | ||| || || Sbjct 22990 CGCGATCGGCACCTCTGTCAGGAGTGCCTGCGAAAGGGCAGACCCACAGCAGCTAAGACG 22931 Query 36906 GTTGACCACATCATCCCTAAAGCACATGGCGGCACTGATGCCGACAGTAATCTGCAGAGT 36965 |||||||||||||| || ||||||||||| || || |||| |||||| || || ||| | Sbjct 22930 GTTGACCACATCATTCCGAAAGCACATGGGGGTACCGATGACGACAGCAACCTTCAGGCT 22871 Query 36966 CTGTGCTGGCCGTGCCATAAGGCGAAGACGGCCCGTGAACGGCTTAAGTGATAAT 37020 |||||||||||||||| ||||| ||||| ||| | || | | || ||||||| Sbjct 22870 TTGTGCTGGCCGTGCCACAAGGCAAAGACAGCCAGAGACAGATTCAAATGATAAT 22816 Score = 109 bits (120), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 26670 TAACCACAG-AACGATGAGGCTAACCGTGGGTAAGCATCACTGGAAAGTAGAAAAACAGC 26728 ||||||||| || || | | ||||||||| | || | |||||| |||||||||| || | Sbjct 34722 TAACCACAGTAAAGAGG-GCTTAACCGTGGATCAGAAGCACTGGCAAGTAGAAAAGCAAC 34664 Query 26729 CTGAGTGGTACGTGAAAGCTGTCAGAAAAACTATCGCGGCGTTGCCGGGGGGTTACGCTG 26788 | | ||| ||| || | | ||| || ||| | | ||||| || || || | Sbjct 34663 CAGCATGGCTGGTGGCGGCAATTAAAAAGACCATCTCAAGTCTTCCGGGTGGGTATGCAG 34604 Query 26789 AAGCTGCTGAGTGGCTGGATGTAACAGAGAACGCTTTATTCAACCGCCTTCGTGCAGATG 26848 |||| ||||| ||| ||| || || || | || || |||||||| |||||| | ||| Sbjct 34603 AAGCAGCTGAATGGTTGGGCGTGACTGAAGATGCATTGTTCAACCGTCTTCGTACCAATG 34544 Query 26849 GCGATCAGATTTTCCCGCTGGGATGGGCAATG 26880 |||||||||||||||| |||| ||||| ||| Sbjct 34543 GCGATCAGATTTTCCCAATGGGCTGGGCGATG 34512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118506236473208