Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq575 104 3e-17 >seq575 Length=9735 Score = 104 bits (114), Expect = 3e-17 Identities = 404/626 (65%), Gaps = 12/626 (2%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || || | ||| || ||||| |||||||| || || | || ||||| | | | | Sbjct 2694 ACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACT 2635 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || || ||||| ||| || ||||| | | | || | |||||||| Sbjct 2634 TCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGC 2575 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 || | ||| || || | |||| || || ||||| || || || || | ||| | ||| Sbjct 2574 TCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCG 2515 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGA 80177 ||||| || || || | | ||| || | ||| || || || ||| || || || |||| Sbjct 2514 GTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGA-GTAGCCGTTTGTGCCGGC 2456 Query 80178 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 80237 ||| ||| || | || || || || || | ||| || || || || | || Sbjct 2455 GATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCGCCGGCGGTCTT 2396 Query 80238 AGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 ||||| | ||||| ||| |||| ||| || || ||||| || || |||||| ||| Sbjct 2395 GGAGATGAGCGCGCA-CGTCTTAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCA 2337 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | | | || |||||| || | || | || ||||| || || || | || | Sbjct 2336 TCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCG 2277 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT-CAATAGCTGATTCT 80415 | || ||||| ||||| | || |||| || ||||||| || ||| | | | | Sbjct 2276 GCGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGCAAGACGCGCT-CA 2218 Query 80416 ATATCCCATTGA---TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472 || || ||| || || || || ||||||||||| | |||||| || || | ||| Sbjct 2217 ATGTCG---TGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGCGGGCGTTCG 2161 Query 80473 ACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAG 80532 ||| |||| | || | |||||| || ||| | ||||| || ||||| ||| Sbjct 2160 GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTTGAAGCCAAAGTAG 2101 Query 80533 TTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||||| || || || ||||| || Sbjct 2100 TTGTAGCCGAAATCGCGGTCGTAGAT 2075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718211616825160