Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11 116 5e-21 seq575 105 1e-17 >seq11 Length=201304 Score = 116 bits (128), Expect = 5e-21 Identities = 176/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||| | |||||| |||||| |||| || |||||||| | ||||||| | || ||| Sbjct 140124 ATCTGGGCACAGTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTG 140065 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||| || |||| ||||| || | | | || ||||| | || || || Sbjct 140064 TCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGAC-GAGCGCTACTTCATCTC 140006 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||| | | ||||| || |||| |||||| || ||||||||||| || || | || Sbjct 140005 GCACGTCCTCGCCTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCG 139946 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||||| ||| | ||| || | |||| ||| ||||| ||||| || |||||||| Sbjct 139945 ATTCTCTGGTGAG--GTCCAGTCAGCCGAGG-CTCGATGCTTCTACGGTTTTCAAATCAT 139889 Query 125255 GAT 125257 ||| Sbjct 139888 GAT 139886 >seq575 Length=9735 Score = 105 bits (116), Expect = 1e-17 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | ||||| || | |||||| || Sbjct 3906 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGACTTGTCCGCCGACCGA 3965 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || |||||||||| |||||| | || | || ||| |||||||| | | | Sbjct 3966 GGTGCCTTCATTGACCAGTCGCAATCGCTTAACATCCAC-TTGTCGAGCCCAACGA-TGG 4023 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | | || ||||| ||||| |||| ||||| | || || |||||||||||||||| Sbjct 4024 CGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAGAGGACTGAAGACGGGCATGTACT 4083 Query 98215 A 98215 | Sbjct 4084 A 4084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741000202424440