Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq174 159 9e-35 >seq174 Length=42168 Score = 159 bits (176), Expect = 9e-35 Identities = 236/333 (71%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 38078 ATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACCGCCAGTCATAGTCTGA 38137 ||||||| | ||| |||||| | || || |||||||||| || || || || || | Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 38138 CGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCCCTTG 38197 |||||| || || || |||| ||||| || | | |||||||| || | ||| |||| Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 38198 ATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGC-GCGAT 38256 |||| | ||| || |||||||| || ||||| |||||| || |||| || | | || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 38257 GATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTGTCGACA 38316 | | | |||| | | |||| | ||||||| | ||| || || | Sbjct 26952 GCGTTAGTT-CTGGTAAATGCGGGCTGCGCCTCAACGCAATCTGCCC---------GAAA 26903 Query 38317 GGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGACTCC 38376 ||||| || || | || || |||||||| |||||||| || || |||| | ||| || Sbjct 26902 GGTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCC 26843 Query 38377 GCTCAACGGGATTATTTCACCCTCAAAGAGCGA 38409 ||||||||||||||||||||||||| ||||||| Sbjct 26842 GCTCAACGGGATTATTTCACCCTCAGAGAGCGA 26810 Score = 158 bits (174), Expect = 3e-34 Identities = 224/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 29117 TGGAAAGTTGAAAAGCAGCCCCGCTGGCTGGTGGCTGCGATTAAAAAGACGATTTCCAGT 29176 ||| |||| |||||||| || ||||||||||| || ||||||||||| || || ||| Sbjct 34682 TGGCAAGTAGAAAAGCAACCAGCATGGCTGGTGGCGGCAATTAAAAAGACCATCTCAAGT 34623 Query 29177 CTGCATGGCGGTTATGAAGAAGCTGCGGAATGGCTGGATGTCACCAAAGATGCTCTGTTT 29236 || | || || |||| |||||| || |||||| ||| || || ||||||| |||| Sbjct 34622 CTTCCGGGTGGGTATGCAGAAGCAGCTGAATGGTTGGGCGTGACTGAAGATGCATTGTTC 34563 Query 29237 AACCGCCTGCGTACTGGTGGTGATCAGATCTTCCCGATTGGGTGGGCGCTGGTACTGCAA 29296 ||||| || ||||| ||| |||||||| ||||| || || |||||| |||| |||||| Sbjct 34562 AACCGTCTTCGTACCAATGGCGATCAGATTTTCCCAATGGGCTGGGCGATGGTCCTGCAA 34503 Query 29297 CGTGCCGGAGGAACCTATCACCTGGCACATTCAGTAGCCAGGGCATCAGGTGGCGTTTTT 29356 | || | | ||| | ||| | || | | || || ||| |||| Sbjct 34502 CAGGCAAGCGACACCAAGCACATCGCTAACGCGGTGTCCCTTCAGTCAAACAGCGTCAAC 34443 Query 29357 GTTCCGCTGGCAGATATGGAAGAAGTGGATAACGCAGATATTAATCAGCGCCTGCTGGAA 29416 |||||||| | | || || || || |||||||||||||| |||||||| ||| |||| Sbjct 34442 GTTCCGCTTGTGGGCATTGAGGATGTTGATAACGCAGATATCAATCAGCGACTGATGGAG 34383 Query 29417 GCGATTGAGCAGATC 29431 | ||||| |||| Sbjct 34382 TCAGTTGAGTGGATC 34368 Score = 145 bits (160), Expect = 2e-30 Identities = 208/292 (71%), Gaps = 1/292 (0%) Strand=Plus/Minus Query 35165 TGATCCGGAATCGCCGGAAAGCTTCATGTTACGTCCGAAACGCCGTCGATGGGTCAATGA 35224 ||| |||||||| || ||| |||||| || || || || || |||| | ||| Sbjct 29516 TGACCCGGAATCACCAGAATCATTCATGAAGCGCCCCAAGCGTAAGCGCTGGGAAAGTGA 29457 Query 35225 GAGATATACCCGCTGGGGTTAAATCCCAGCCGTGCGCCTGCTGCGGGAAGCAGGCGGATG 35284 || |||||| | |||| | ||||| ||| ||||||| || ||||| |||||| || | Sbjct 29456 GAAATATACAAGATGGG-TAAAATCGCAGACGTGCGCATGTTGCGGCGTGCAGGCTGACG 29398 Query 35285 ATCCGCACCACCTGATAGGCCACGGTCAGGGAGGGATGGGAACAAAGGCGCATGACCTCT 35344 |||| || ||| | || || || || ||||| || |||||||| ||||||||||| | | Sbjct 29397 ATCCTCATCACATCATCGGACATGGACAGGGGGGAATGGGAACGAAGGCGCATGATTTAT 29338 Query 35345 TTGTGCTGCCGTTGTGCAGAACGCATCACAATGAGTTACATGCGGACACCGTGGCATTCG 35404 ||||| | ||| | |||||| |||||||| |||| | || ||| | || || | Sbjct 29337 TTGTGATACCGCTATGCAGAGCGCATCACGATGAACTGCACCGGGATATGAGAGCGTTTG 29278 Query 35405 AAGAGAAATACGGCTCTCAACTGGAGTTGATATTTCGTTTTATCGATCGCGC 35456 ||| |||||||||| ||| | ||| || | || | || |||||| ||| Sbjct 29277 AAGCGAAATACGGCAGTCAGATAGAGCTGCTGTTCAGGTTCCTCGATCACGC 29226 Score = 80.6 bits (88), Expect = 7e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 27872 AGCGAATCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCTGTT 27931 |||||||||||| | ||| || ||| | || ||||||||||||||||||||||||||| Sbjct 35843 AGCGAATCATCCCGAACTTCTTACGCCTCGGGAGGCTACTTCGTGGGCGTCCTGCCTGTT 35784 Query 27932 CGCTGCT 27938 ||||||| Sbjct 35783 CGCTGCT 35777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128345492255558