Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq174 401 2e-107 >seq174 Length=42168 Score = 401 bits (444), Expect = 2e-107 Identities = 1209/1841 (66%), Gaps = 53/1841 (3%) Strand=Plus/Minus Query 37768 AATGGCGACGTTACGTGAACTGATTATCAAAATTTCGGCAAATTCACAG-TCATTCCAGT 37826 |||||| ||| | || ||||| ||||| |||||||| || || || ||| || || ||| Sbjct 14157 AATGGCTACGCTGCGCGAACTCATTATTAAAATTTCTGCCAACTC-CAGCTCTTTTCAGA 14099 Query 37827 CGGAGATCCAGCGGGCGTCCCGTATGGGCAGTGAATATTACCGGACCCTGCAGAATGGCG 37886 ||||| ||||| || || ||||| || ||||||||||| || || | || | Sbjct 14098 GTGAGATTGCCCGGGCCTCGCGCATGGGTGCAGACTATTACCGGACTATGGAGCAGGGAG 14039 Query 37887 GACGTCAGGCTGCTGCGGCAGCCAGGGAGCAGCGCCGGGC---TCTGG--CTGAGCTGCA 37941 | || |||| ||||| || || | || | ||||| || || ||||| || Sbjct 14038 GCCGCAAGGCCGCTGCAGCGGCGCGTGAAAGCCAGCGGGCGATTCAGGACCTGAG-TGAG 13980 Query 37942 CAGCCAGTTGACGGAAATCCGC----GCTTCGGCTGTCGGAATGACCGGTGCGTTTGCCN 37997 |||| || |||| | | |||| | | |||||||| | || ||| Sbjct 13979 CAGCTTGT--------ATCCACTAAAGAGACGGCGCTGGAGATGACCGGCGTCTTCGCCG 13928 Query 37998 NNNNNNNNNCCACCGGACACCTGATTTCGCTGGCGGATGAATGGAGCTCCGTGAATGCCC 38057 || | || ||||||| | ||||||| | |||| ||||||| |||| Sbjct 13927 GCGCATTTGCCGCGGGCAGCCTGATTGAGATGGCGGACAACTGGAATGCCGTGAACGCCC 13868 Query 38058 GTCTGAAACAGGCGTCGCAGTCATCGGATGAATTTGCGTCATCACAGAAAGTGCTGATGG 38117 | || || ||||| || ||||| | | || || | |||||| |||||||| Sbjct 13867 GCCTTAAGCAGGCTTCTCAGTCCACAGGCGAGTTCAGCACGGTGCAGAAATCGCTGATGG 13808 Query 38118 ATATCAGCCAGCGGACAGGCACCGCATTTTCGGATAATGCGGCCCTGTTTGCCCGTTCGG 38177 ||||||||||||| || || || | |||| || |||||| || | ||| ||||| | Sbjct 13807 ATATCAGCCAGCGTACCGGTACGGTATTTGGCGACAATGCGAATCTTTATGCGCGTTCCG 13748 Query 38178 CTGCCTCGATGCGTGAATATGGTTACAGTGCTGATGATGTGCTGAAGGTGACGGAGGCCA 38237 |||| || ||||| |||| || ||| ||| | |||||||| ||||| || ||||| Sbjct 13747 CTGCTTCCATGCGGGAATTCGGATACTCTGCGCAGGATGTGCTCAAGGTTACCGAGGCAG 13688 Query 38238 TTTCGACAGGGCTGAAAATCTCCGGTGCCAGTACGGCAGAGGCGGGCTCGGTGATCACCC 38297 | || |||||||| || | || || || ||| | | ||| |||| || ||||||| Sbjct 13687 TATCAACAGGGCTTAAGCTGTCAGGCGCGAGTTCTGAAGAAAGCAGCTCTGTTATCACCC 13628 Query 38298 AGTTCAGTCAGGCGCTGGCGCAGGGTGTATTGCGTGGTGAGGAGTTTAATTCGGTCAATG 38357 ||||||| ||||||||||||||||| || | |||||||||||||| || | || || | Sbjct 13627 AGTTCAGCCAGGCGCTGGCGCAGGGCGTGCTTCGTGGTGAGGAGTTCAACGCAGTTAACG 13568 Query 38358 AAAGTGGTGACCGGATCGTACGTGCACTGGCTGCGGGTATGGGCGTGGCCCGTAAAGATC 38417 | ||||| || | | ||||| ||||| || ||||||||||| ||||| ||||| | Sbjct 13567 AGGCGGGTGATCGCGTTATCCGTGCTCTGGCCGCTGGTATGGGCGTTGCCCGCAAAGACC 13508 Query 38418 TGAAGGCAATGGCGGATGACGGAAAACTGACAGCGGATAAAGTGGTCCCCGCGTTAATCA 38477 | ||||| ||||| ||| | || ||||||| ||||||||||| || || | | || Sbjct 13507 TTAAGGCGATGGCCGATCAGGGCCAACTGACCATTGATAAAGTGGTGCCAGCCCTGACCA 13448 Query 38478 GCCAGCTGGGGATATTACGTGATGAATATGCGGCCATGCCGGAAACGGTTTCCAGTAGTA 38537 ||||||| | | | | | ||| | | | | ||||||| |||| || || | Sbjct 13447 GCCAGCTTGATAAGCTCAGGGGTGAGTTTTCCTCACTGCCGGACTCGGTGTCGGGTTCTG 13388 Query 38538 TCACAAAGGTGGAAAACGCCTTTATGGCCTGGGTGGGCGGTGCGAATGAGGCCAGCGGG- 38596 | || ||||| | ||||||||| ||||| |||| || || || | |||| Sbjct 13387 TTACCAAGGTTCAGAACGCCTTTGAACAGTGGGTTGGCGAGGC-AAACAGTGCGTCGGGC 13329 Query 38597 GTGACAAAAACGCTCTCCGGCATGCTGAACGGTGTTGCCGGACAGATTGAGAATGTGGCA 38656 | ||| || || ||||| | ||| || | | | | || || | | || Sbjct 13328 GCAACATCCACCCTTTCCGGGGTTCTGGTTGGCGCATCTAAAAACATAGACACGATCGCC 13269 Query 38657 ACAGCCGTGGGCGCGCTGGTTGCCGTCGGGGTTGCCCGGTACTTTGGCAATATGGCCTCC 38716 || | ||||| ||||| ||| |||| | ||| ||| ||| || ||||| ||| Sbjct 13268 ACCGTTACCGGCGCACTGGTGGCCATCGGTGCTGCAAGGTTCTTCGGGGGCATGGCATCC 13209 Query 38717 GGAGCGATGTCTGCCACGGCAGGACTTGTGACGGCTGCACGTAA-TGAAGTTGCACTGGC 38775 || ||| | ||||| | | || || | || || | | || || || || | | Sbjct 13208 GGTGCGGTTGCTGCCTCAACGGGCGTTTTTACTGC-GTATAAAAGCGAGGTCGCCTTAAC 13150 Query 38776 GGAAGCACAGTTCAGGGGAACGCAGATTGCCACGGCGCGGGCAAGGGCAGCCGTGTACCG 38835 | || ||| | | || || |||||| |||| ||||| || | ||||| || || || Sbjct 13149 CCAGGCGCAGATTCGCGGTACACAGATTTCCACAGCGCGTGCCCGCGCAGCAGTCTATCG 13090 Query 38836 TGCTCAGCAGGCCGTGGCGGCAGCCCGCGGGACGGAGATGCAGATTGCTGCAGAGGCCCG 38895 || |||||||| | ||||| || || || || | | |||| ||||| ||| ||| Sbjct 13089 CGCACAGCAGGCGCTTGCGGCCGCACGGGGAACAGCCACGCAGGAGGCTGCTGAGCGCCG 13030 Query 38896 TCTGGCGGCCACACAGGAACGCCTGAACAGAAATATTGCTGCCAGAAGCGCCGCCCAGAA 38955 ||| || ||| | ||| || | | ||||||| | ||| | | |||||| ||| | Sbjct 13029 TCTTGCTGCCGCGCAGCTTGCTCTCACCCGAAATATGACGGCCCGTACCGCCGCACAGGA 12970 Query 38956 TGCG-CTGAACAGTACAACGGCGGTGGGCTCACGTCTGATGAGCGGTGCGCTGGGGCTGG 39014 ||| || ||||| | || | || || || || |||| |||||||| || || |||| Sbjct 12969 -GCGCCTCAACAGCATCACCTCCGTTGGATCGCGACTGACGAGCGGTGTACTCGGTCTGG 12911 Query 39015 TTGGTGGCGTACCCGGACTGGTGATGCTGGGGGCTGCAGCATGGTACACGCTGTACCAGA 39074 |||| ||| | ||||| ||||| ||||| || || | ||| |||||||| |||| ||| Sbjct 12910 TTGGGGGCATTCCCGGCCTGGTCATGCTCGGAGCCGGAGCCTGGTACACCATGTATCAGC 12851 Query 39075 ATCAGGAGCAGGCCAGGGAGTCTGCGC--GCC-AGTATGCACTGACGATAGATGAAATCG 39131 |||||||||||| ||||| || || | ||| | | || ||| | | ||| | Sbjct 12850 GTCAGGAGCAGGCAAGGGAATCGGCACAGGCCTACATTTCA---ACGCTGGCTGATGT-- 12796 Query 39132 CGCATAAAA----CGCCGTCAATGTCTTTGCCTGAAGCCTCAGATAATGAAGGACGAA-C 39186 | |||| |||| | ||| ||||||| | || || | || | || | Sbjct 12795 --AAAAAAAGCTGCGCCCACCATGAGCCTGCCTGAGGTATCCGA-CACACAGTCCAAAGC 12739 Query 39187 ACGGGCGGCGCTGACAGAGCAGAACCGGCTGATTGATGAACAGGCCAG--TCGGGTGAAA 39244 | || |||| | ||||||||||||||| |||| || ||| ||| | ||| || Sbjct 12738 TCAGGGCTCGCTTAAAGAGCAGAACCGGCTTATTGGCGAGCAG--CAGGATAAGGTCGAA 12681 Query 39245 TCCCTGCAGGAAAAAATCGCAGGATATCAGTATGTTCTGGCGAACCCGGGCTGGACGACC 39304 || | | |||| || ||||| ||| | | | || | || || | | Sbjct 12680 AAGCTCAAAACAGAAATTGCTGGATACCAGCAGATAATCGCCAGTCCCGGACCCTCCATA 12621 Query 39305 GGTGACGGATTCATGATAAACCATCTGACCTCGGTGA-AGACCGTAACGGAAGGGCTTGC 39363 || | | ||| || |||| || |||||| ||| ||| || | | || | ||| Sbjct 12620 GGGG--GCTTTCTTG-TAAATCACCTGACCAGCATGACAGA-GGTTTCAGCCGGAC-TGC 12566 Query 39364 TCAG-GCAACAGAGCAGCTTGCCGTTGAGCAGTCCCGTCTGGCACAGATGCAGGAAAAAG 39422 || |||||| | ||| || ||||||||| | || ||||||||||| || | Sbjct 12565 AGAGCGCAACATCGGCGCTCGCTGTTGAGCAGGAAAGGCTTAACCAGATGCAGGATAAGG 12506 Query 39423 CGCAGTCCATTCAGGATGTGCTTGCCGGGCTGGAAGACCGTCGTGTGGCGTTAATTCGTC 39482 | | |||| ||| | || |||| |||||| | || || || || | || ||| Sbjct 12505 CTGCGACCATCCAGCAGGTTCTTGAATCTCTGGAATATCGCCGGGTAACGCTTATCCGTG 12446 Query 39483 AGCAGGCGGCAGAGCAGAATAAGGTGTACCAGTCCATGCTGGTTATGAATGGTCAGCATA 39542 | || ||| |||||||| | || ||||| |||| | |||||||| ||||| | Sbjct 12445 AAACTGCTGCACAGCAGAATTCCGCTTATCAGTCGCTGCTCATGATGAATGGCCAGCACA 12386 Query 39543 CGGAATTCAACCGTCTGCTGGGGCTGGGTAATGAACTGCTT 39583 | ||||| ||||| || ||| |||||||||| | |||||| Sbjct 12385 CTGAATTTAACCGGCTTCTGTCGCTGGGTAATCAGCTGCTT 12345 Score = 141 bits (156), Expect = 3e-29 Identities = 234/333 (70%), Gaps = 16/333 (5%) Strand=Plus/Minus Query 25928 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 25987 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 25988 AACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 26047 | | ||| |||| |||||| ||| | |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 26048 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 26103 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 26104 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGCATCAACGCCACCTGCTCCGGTACCGT 26162 || ||| ||||| | ||| |||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 26163 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 26222 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 26223 CGCTGAACGGGATTATTTCATCCTCAGAGAACG 26255 |||| ||||||||||||||| ||||||||| || Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAGCG 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185240388862376