Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq174 138 4e-28 seq15 87.8 7e-13 >seq174 Length=42168 Score = 138 bits (152), Expect = 4e-28 Identities = 232/331 (70%), Gaps = 16/331 (5%) Strand=Plus/Minus Query 57503 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 57562 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 57563 AACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 57622 | | ||| |||| |||||| ||| | |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 57623 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 57678 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 57679 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGGATCAACGCCACCTGCTCCGGTACCGT 57737 || ||| ||||| | ||| ||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 57738 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 57797 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 57798 CGCTGAACGGGATTATTTCATCCTCAGAGAG 57828 |||| ||||||||||||||| |||||||||| Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAG 26813 >seq15 Length=176901 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 28004 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 28063 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 123890 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 123831 Query 28064 TCTTTCGGAGA-AACATTCTGCCCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 28119 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 123830 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 123775 Query 28120 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 28179 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 123774 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 123715 Query 28180 TTCAAGGATAACCCATGCATCATC 28203 ||| || | |||||||| ||||| Sbjct 123714 TTCCAGAACGACCCATGCGTCATC 123691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191435120307784