Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq2 122 9e-23 seq13 118 1e-21 >seq1 Length=970878 Score = 174 bits (192), Expect = 2e-38 Identities = 322/467 (69%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 135741 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135800 || || ||||| || || | || | ||| || | |||| |||||| || || | | Sbjct 158219 GGGCTGAACAGGGTGATATCTTCGCCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGC 158278 Query 135801 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135860 ||||| || || || | ||||| | |||||| |||| || || |||||||| | | Sbjct 158279 TGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGC 158338 Query 135861 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135920 || | ||| ||||| | || | ||||||||| ||||| | || || || || |||||| Sbjct 158339 ACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCA 158398 Query 135921 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135980 |||| ||||| || || || ||||| || || ||||| ||||| || |||| |||||| Sbjct 158399 CGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATA 158458 Query 135981 ACGCCAGTATGACGAAC--TTCACCATGCC-CGATCTTAGAT-CCTTCCGCGCGAATCAT 136036 ||| ||||| |||| |||||| ||| ||| | | || ||| || || Sbjct 158459 CAGCCGGTATG--GAACGCTTCACC--GCCGCGAATCGGGCTGCCCAGCGCACGGATACG 158514 Query 136037 ACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGT 136096 ||| ||||||||||||||||| ||||||| | ||| || | ||||| | | || Sbjct 158515 ACCGGCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAGGT 158574 Query 136097 TTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCACGAACTAAATTGTCG 136156 |||||||| | || ||| | | || |||| ||| || || || || || || Sbjct 158575 GGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACG 158634 Query 136157 TGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203 |||||| || || || || | ||| || || || ||||| ||||||| Sbjct 158635 TGTTGGGGTGCGTACGCCAGACATGATTGGCGTCGGCAGGGAGATTT 158681 >seq2 Length=722220 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 53617 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 53676 ||||| || || | || ||||| || | || || || ||||||| ||| |||||| Sbjct 515044 AATTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGT 515103 Query 53677 CTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 53736 || |||||||| |||||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 515104 GAGTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGA 515163 Query 53737 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCA 53796 ||||| | || ||||||| |||||| || || ||||||| || | |||||||| Sbjct 515164 TGTTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCG 515223 Query 53797 CCTTC 53801 ||||| Sbjct 515224 CCTTC 515228 >seq13 Length=199142 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||| ||||||||||| | || ||||| |||||||| || || || || || || || Sbjct 145333 TTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACG 145392 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 ||| || || || |||||||| || || |||||||| || || |||||||||| ||| || Sbjct 145393 CACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGC 145452 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAACA 53805 || || | |||| || || ||||| | |||| |||||| |||||||||||| Sbjct 145453 ATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACA 145510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524687824964720