Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 1e-14 >seq6 Length=280608 Score = 93.3 bits (102), Expect = 1e-14 Identities = 322/501 (64%), Gaps = 25/501 (5%) Strand=Plus/Plus Query 39943 AGAGCCAGTTCAACAGTCTCTACTTTTGATGAATGTTCGACATCCAGCAATCGATCTATT 40002 || ||||| || ||| | || ||||| ||||| || || |||||||| | |||||| | Sbjct 19241 AGCGCCAGCTCCACATTTTCGACTTTCGATGAGTGCTCTACATCCAGTAGTCGATCAACC 19300 Query 40003 TGCGGCGCTTTCTGACCAAGTTTTCTGGCCAAGTCAGCCTTACGGGTTCCAGTTTCGATC 40062 || || | ||| || || | | |||| || | |||||||| || ||||| ||| Sbjct 19301 TGTGGGCCATTCACGCCCAGCTGGCGTGCCAGATCGACTTTACGGGTGCCGGTTTCAATC 19360 Query 40063 ATTGCATTATGTAATGCCGCTTTCATAGCGACTAGCACAGGTAACGCAATAACATATTCA 40122 ||||| || | | |||||||||||| || || || ||||| | | | || || || Sbjct 19361 ATTGCGTTGTAAAGTGCCGCTTTCATTGCCACCAGTACAGGCACAGAGACAATGTACTCT 19420 Query 40123 CCGGCTTGAGGGGCAGAAGCGGCTGGTATAGGGCGACGTTCGTCAATCTCTATAGATAGA 40182 || | | || | || | || || || ||||| || ||||| | ||| | Sbjct 19421 CCTTCCAGCGGTTTACTGGCAACCGGAATCGGACGACGCGTATCCATCTCGAGAGAGATT 19480 Query 40183 GCTGTAACAATACCGTCTACCGCCTCCAGTAGCGCCTCTTCTTTAGAGTCACCTACTGAA 40242 || || || | || ||| | || || || || || || | |||||| || ||| Sbjct 19481 GCCGTCACCAGTCCATCTTCGGCTTCTGCAAGTGCTTCCTCAACGGTGTCACCGACGGAA 19540 Query 40243 TTTAGCAGCGGCAGATCACGGCATGAAACGATAAAAGTACCGCTAT---CATCATCGCGT 40299 | || | ||||| |||||| || || || | | ||| || | | | |||| | || Sbjct 19541 TGCAGTAACGGCAAATCACGACACGAGACCTCATAGGTATCGGTTTTGGCGTCAT-GAGT 19599 Query 40300 TCTAGTTTCACTGCGTAATTAAACATATGATTTACATTCCAATTTATGAAGTTTTTAAAG 40359 || | | || || |||||||||||| || |||| | | ||| Sbjct 19600 --TAATCTGACGGCATAATTAAACATA-GAGTTAC------CTCTCTGA----------- 19639 Query 40360 CTGGGGCTTATAGCCCCAGATCTTTCAATATTTTCTTTCTTAATGGCTCCGGCATTTCTT 40419 | ||||| | || ||||||||||| || ||||| | | || |||||||||| Sbjct 19640 -TCGGGCTCACAGGCCCAGATCTTTTAAAATTTTTCTGCGCGTACCTTCAGGCATTTCTT 19698 Query 40420 TTGAACCGTGGTCAGGAAAAA 40440 ||| ||||| || ||||||| Sbjct 19699 TTGCTCCGTGATCCGGAAAAA 19719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148151994139378