Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq1 123 4e-23 seq3 105 1e-17 >seq1 Length=970878 Score = 123 bits (136), Expect = 4e-23 Identities = 313/471 (66%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 147144 AAACTTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCAATTTAGC 147203 ||| | || || || || || || ||| | ||||| || ||||| |||||||| || ||| Sbjct 158682 AAAATCTCCCTGCCGACGCCAATCATGTCTGGCGTACGCACCCCAACACGTCAGTTCAGC 158623 Query 147204 TCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGTTCGATCAACAAGGTATCTGAAGCT 147263 || |||||| ||||| | |||||| ||| || |||||| | | || ||| Sbjct 158622 TCCTGTGTGCTGATCGAGTGCGGCGACAGCCTGGACTCCATCAAC--GCCACCTCCAGCG 158565 Query 147264 --ATCGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAATTCGAG 147321 || || | || | | | ||||| || || || | |||| ||| || || | Sbjct 158564 CAATTGTGAAATATGTCTCTCAGCGTGCCGGCATCGGTATCAACGCCGGTCGTATCCGTG 158505 Query 147322 CAGAGGGTT---CGGTTGTACGTGCGGGTGAAATTCGT--CACACTGGCGTAATTCCTTT 147376 | ||| || || || | |||||| ||| || || ||| || || || Sbjct 158504 CGCTGGGCAGCCCGATT---CGCGGCGGTGAAG--CGTTCCATACCGGCTGTATCCCGTT 158450 Query 147377 CTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTGC 147436 || || || || ||||| ||||| || || |||||||| || || || |||||||| || Sbjct 158449 CTACAAGCATTTCCAGACCGCGGTGAAGTCCTGTTCTCAGGGCGGCGTTCGTGGCGGCGC 158390 Query 147437 TGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGAA 147496 || || ||| |||||||| ||||| | ||| | |||| || || || |||||||| Sbjct 158389 AGCCACGCTGTTCTACCCGATGTGGCATCTGGAAATCGAAAGCCTGCTGGTGCTGAAGAA 158330 Query 147497 CAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGTATCAATTAACCG 147556 |||| |||||||||| ||||| | ||||| | ||||| | ||| | ||| Sbjct 158329 CAACCGTGGTGTTGAAGGCAACCGCGTGCGTCACATGGACTATGGTGTACAGCTCAACAA 158270 Query 147557 ATTGATGATGCAACGCCTGGTTAATAACGAGTACATCACGCTATTCAGCCC 147607 ||||| || |||||| | || ||| | ||||| || |||||||| Sbjct 158269 GCTGATGTATCAGCGCCTGCTGAAAGGCGAAGATATCACCCTGTTCAGCCC 158219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 70975 TGTGAGCATCACATCGTAACAATCGACGGCTTTGCCACTGTCGCATACATTCCGAAGAAC 71034 ||||| || ||| | || | ||||| ||| ||||| ||||| |||||||| || | Sbjct 241993 TGTGAACACCACTTTGTGATCATCGATGGCAAAGCCACCGTCGCCTACATTCCCAAAGAA 242052 Query 71035 AAAGTTCTTGGTCTGTCGAAAATGAATCGCATCGTTGAGTACTTCGCTCGTCGTCCGCAG 71094 || || |||| ||||||||||| || || ||||| ||| ||| || | || |||||| Sbjct 242053 AAGGTGATTGGCCTGTCGAAAATCAACCGTATCGTGCAGTTCTTTGCCCAGCGCCCGCAG 242112 Query 71095 ATTCAAGAACGTCTGAC 71111 | || || |||||||| Sbjct 242113 GTGCAGGAGCGTCTGAC 242129 >seq3 Length=630259 Score = 105 bits (116), Expect = 1e-17 Identities = 228/341 (67%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 8894 TGGAAAGAACTGACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGT 8953 ||||||| | || ||||| || ||||| || ||||||||||||||||| || || Sbjct 228716 TGGAAAGCAGAAACAGGCTATGGGTTCAGCCTTTACAGCACGCCAAGCGAGAATCTGTGC 228657 Query 8954 GATCGTTTCTGTCGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAA 9013 || || ||||| ||||| ||| | | | | || | | | || | | |||||| Sbjct 228656 GACCGCTTCTGCCGTCTTGATGCGGCGCAGTTTGGCCTGGTGCCAGGCGTTACCGACAAG 228597 Query 9014 GACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAG 9073 | ||| ||||| ||| || || | || || ||||| || ||||| | ||| || Sbjct 228596 GGCTACTACACCAACAGCTTCCATCTCGACGTTGAGAAGAAGGTCAATCCTTACGACAAA 228537 Query 9074 ATTGATTTCGAAGCAGCATACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAA 9133 || || || ||||| | || || | |||||||| || |||||||| || | ||| Sbjct 228536 ATCGACTTTGAAGCGCCCTATCCGCCGCTGGCGAATGGCGGATTCATCTGTTACGGCGAA 228477 Query 9134 TTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAG 9193 | |||||| ||| ||||| |||| | || ||| || ||||||||| || | Sbjct 228476 TACCCGAATGTGCAGCACAACCTCAAGGCGCTGGAGGATGTCTGGGATTACAGCTACGAC 228417 Query 9194 AAAGTTGCGTACTTCGGCACAAACACGCCGATTGACCAGTG 9234 || | || | |||||| || || |||||||| |||| Sbjct 228416 CGCGTGCCCTATTACGGCACCAATACCCCGATTGATGAGTG 228376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783278436280560