Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-25 seq2 114 1e-20 >seq13 Length=199142 Score = 131 bits (144), Expect = 2e-25 Identities = 190/267 (71%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| || || || ||| ||| | ||| | |||| | ||| ||||||| | Sbjct 116760 CCGTGAGTCAGGTGTCCACCGTGCGCCAGGTTCATCCCCAGAATAGTATCGCCCGGCTGC 116819 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || |||||| || ||| || |||||||| || || || || ||||| ||| Sbjct 116820 AGCAGCGCGGTGTAAACCGCAAAGTTAGCCTGTGAACCTGAGTGTGGCTGCACGTTAGCG 116879 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT---CGATTTCATCG 7114 ||| | || |||||||||||| || || || || ||||| | || |||| ||| || Sbjct 116880 TAATCGGCACCAAACAGTTCTTTTGCGCGATCGATCGCCAGTTGCTCAACGATATCAACG 116939 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | | |||||||| || || |||||||||||||| || ||||| || || ||||| Sbjct 116940 ---TACTCACAGCCGCCGTAGTAGCGTTTGCCCGGATAGCCTTCAGCGTATTTATTGGTG 116996 Query 7175 AAAATAGAACCCTGTGCTTTCATAACA 7201 | |||||| ||||| | ||| ||| Sbjct 116997 AGCTGAGAACCTTGTGCCTGCATGACA 117023 Score = 127 bits (140), Expect = 2e-24 Identities = 135/177 (76%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 65952 GTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAGCGTACG 66011 || || || || || || ||||| || || |||||||| || | || ||||| || ||| Sbjct 145337 GTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACGCACG 145396 Query 66012 GCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGAT---TAACGATTGCA 66068 ||||| || ||||| ||||| || || || ||||| ||||| |||| |||| |||| Sbjct 145397 GCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAAC---TGCA 145453 Query 66069 TCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCAACA 66125 |||||||| || | ||| ||||| || ||||| |||||||| |||||||||||| Sbjct 145454 TCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACA 145510 >seq2 Length=722220 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 65939 ttAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||| || || | ||||| ||||| || || || ||| | || ||||| ||| | || Sbjct 515046 TTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTGA 515105 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATT 66058 |||||||| || || ||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 515106 GTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGATG 515165 Query 66059 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | || ||||| ||| | | |||| | ||| || |||||||| |||||||| || Sbjct 515166 TTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGCC 515225 Query 66119 TTC 66121 ||| Sbjct 515226 TTC 515228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555318986147240