Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq3 293 3e-74 seq1 167 3e-36 >seq3 Length=630259 Score = 293 bits (324), Expect = 3e-74 Identities = 853/1278 (67%), Gaps = 44/1278 (3%) Strand=Plus/Plus Query 37629 TTCATGCAGGCCGATATAGCCGATACTGACAG--AAGCGCGTCCATTTTC--AAATGCTT 37684 ||||||||||||||||||||| | ||||| | || || ||||| |||| Sbjct 228822 TTCATGCAGGCCGATATAGCCCAGC--GACAGCGACGCACGGCCATTACGGAAAATAGGA 228879 Query 37685 TCATGATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCG 37744 | || || ||||| | |||||| || || || ||||||||||| | || || || | Sbjct 228880 CC--GACTTCATCATCCGCATTCAGCCGAACGCCACAGGCGCCTTCCATATAGAGGATGG 228937 Query 37745 GAGCCACGCTTGCCTTAA-CGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTA 37803 | || |||| || || | | | ||| || | || || ||| || || | ||| Sbjct 228938 GCGCGACGCGCGCTTTGGTCTTCTC-CAGCCGCGCCACCCGCGTCATCAGCGCCCGCTTA 228996 Query 37804 ACTACTTCCATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCG 37863 | | | || ||| | || || ||| |||||| ||| | || ||| || || Sbjct 228997 GCCAGCTGCAGTCGCGCATCGAGCAGCGTCCAGAAGCGCGCTTCATCACCGCCCGCTTCC 229056 Query 37864 AGTGCGATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACT 37923 |||||||| |||||||| ||||| | | ||||| | ||| || || || || |||| Sbjct 229057 AGTGCGATGCGCGGCAGGTTCAGGCTGATTACCCCGATATTGTTGCGGCCCTCATGAATC 229116 Query 37924 TCATTGCCATTTTCGTCTTCCCAACGATGCAAG-AAACTGCGGCATCCCATAGGGAACTT 37982 | | ||| || || || | |||| |||| ||||| ||||| ||||| ||| || Sbjct 229117 TGCTCGCCGTTCTCTTCATA--AACGC--CAAGGAAACTACGGCAGCCCATTGGGGTTTT 229172 Query 37983 AAAGCTGCCAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTT 38042 ||| ||| || || ||| || | ||| ||| | || || || |||||||| ||||| Sbjct 229173 AAACGAGCCGGTGACTTTAACCACCTGATCGTAATTGAGGATGTCGGGATACATCCGCTT 229232 Query 38043 AGAAGCGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTT 38102 ||||||||||| |||||||| |||||| ||| ||| | | ||| Sbjct 229233 GCTGGCGCACTCCAGCGCCAGTTGTTTGATATCGTAATTAACGTCGCCCGCCCGGCGGTT 229292 Query 38103 GTGTCCGTCTTTCAGA--GCA-AACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTT 38159 | || ||| || || ||||||||||| |||||||||| || | | | ||| Sbjct 229293 GA---CGCCTTCGCGAATGCTGAACACCAGTTTAGGGAACACCGCCGTCTTGCGATTTTT 229349 Query 38160 GCCAAGTCCAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAG-C 38218 || ||||| ||||| || || |||| | ||||||||| || ||||| | Sbjct 229350 ACCCAGTCCGGCCAGCCGGTTAAGCAGAATCGACTGCTGAATCAGCCGGGCCGCCCAGTC 229409 Query 38219 TTTCACCCAGACCAAAGCCGAATGT-ACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGA 38277 || ||||||||||| || || || ||| || || || || ||||| |||| ||| || Sbjct 229410 CGTC-CCCAGACCAAAACCAAAGGTGACA-AACGGCGTCTGGCCGTTGGCGGTGTGCAGG 229467 Query 38278 GTGTTCACCTCGTATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGC 38336 || |||||||| ||||| || ||| | || || || ||| |||| | || || Sbjct 229468 GTATTCACCTCATATTCCAGCGACTGAAAGGCGTCGTAGCACT-CTTTCTCCGTAC--GC 229524 Query 38337 AATAGCGTATTCTT-TCG-CATCTGGAATTTTCCAATAACGGGCT-TCGTCCAAATGCTT 38393 ||| || || ||| | | || || | ||| | || ||| ||| |||| Sbjct 229525 TGGCGCGCATACTGCTCGGCCTGCGGGATCTGCCACTGCTCAGCAATCG-CCAGATGCCG 229583 Query 38394 TTCATGAGTCATCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCC 38453 ||| || || |||| |||| ||||||||||| |||||||| ||||| ||| |||| Sbjct 229584 GGCATAGCTCTGCTCAACAAACGGGGCCAGCACTTCATCAATACGGTTAATGGTGGTGCC 229643 Query 38454 GCCGTAAATGTGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGA 38513 ||||||||| || || || || ||||| || ||||| || ||||| | ||||| | Sbjct 229644 GCCGTAAATATGGCTGGCGACCTGCGCGATGATCTGCGCCGTCACGGCGGTGGCGGTGGC 229703 Query 38514 AATGCTTTTCGGAGTTTCGATCTGTGCATTTCCCATACGGAACCCG-CGATCTAACATGC 38572 || ||| || | ||||||| ||||| ||||| ||| ||| | || | ||||| Sbjct 229704 GATCGATTTAGGCGGCTCGATCTCAGCATTGCCCATTTTGAAACCGTTGGTC-AGCATGC 229762 Query 38573 CTTTGACATCTATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCAT 38632 |||| | ||| |||| ||||||||| ||||| |||||||| || || ||||| ||||| | Sbjct 229763 CTTTCAGATCGATCAGCATGCAGTTGAACATCGGGAAGAAAGGGGAGTAGTCGAGATCGT 229822 Query 38633 GGAAGTGCAGCCAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAG---ATAATGCT 38689 | |||| | | ||| ||||| || ||| || || || || | |||| Sbjct 229823 GATAGTGGATCTCGCCGCGCTCGTGCGCCAGCACCACATCGCGCGGCAGGATCTGCTGCT 229882 Query 38690 TTGCAAAGTGCTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAG 38749 ||| |||| || || || || || | ||||||||| || || ||||| ||||| Sbjct 229883 GTGCGTAGTGTTTTGCCACGATCCCGGCCAGCAGATCGCGCTGCGTCGGGATCACTTTGC 229942 Query 38750 CGTCTTTGTTAGCATTCTCATTCATGATGCCTTCATCTTCCTGCTTCATCAGTCCCATGA 38809 ||||||||| |||||||| |||| | | ||| ||| | | |||| || || Sbjct 229943 TGTCTTTGTTGGCATTCTCGTTCAGCAGCGCCGCATTGGTCTGATCGACCAGT-CCGCGA 230001 Query 38810 TACGCTTG--GTCA-TGTCGCTGTTCAAGTCGCGAGCAACGTCACGATCATAGCGGTATT 38866 || || || | || | ||| | ||||| || || || ||||| | |||||||| Sbjct 230002 ATGGCGTGATGTAACTGGCTCTGACGA--TCGCGGGCGACATCGCGATCGTGGCGGTATT 230059 Query 38867 CGATGTAGGAGCGAGCCA 38884 | ||||||| ||| |||| Sbjct 230060 CAATGTAGGCGCGGGCCA 230077 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 37153 GTGAATTCACCGTGATAGCCACATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAA 37212 ||||| || |||| |||| || || |||| |||||| || ||||| || |||||| Sbjct 228346 GTGAACTCGCCGTTGAAGCCGCACTCGTAGCACTCATCAATCGGGGTATTGGTGCCGTAA 228405 Query 37213 TACGGT--GTGTTCAGATAAGCATAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTT 37270 || || | | || | | |||||||| || || |||| ||| || || || | | Sbjct 228406 TAGGGCACGCGGTCGTAGCTG--TAATCCCAGACATCCTCCAGCGCCTTGAGGTTGTGCT 228463 Query 37271 TCATATTCGGATATTCTCCGTATGAAATAAATCCACCTGAACTCAGAGGAATAAATTGCT 37330 || |||||| ||||| ||||| | || ||||| || ||| || | | || Sbjct 228464 GCACATTCGGGTATTCGCCGTAACAGATGAATCCGCCATTCGCCAGCGGCGGATAGGGCG 228523 Query 37331 TTTCAAAATCAATCTTGTCATAAGGATTGGTATTATGACGGACGTCGAGGTGGAAGCTGT 37390 |||||| || || ||||| ||||||||| || | |||||||| |||||||||| Sbjct 228524 CTTCAAAGTCGATTTTGTCGTAAGGATTGACCTTCTTCTCAACGTCGAGATGGAAGCTGT 228583 Query 37391 TTGTGTAATA 37400 | ||||| || Sbjct 228584 TGGTGTAGTA 228593 >seq1 Length=970878 Score = 167 bits (184), Expect = 3e-36 Identities = 310/455 (68%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 43574 GGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATT 43633 || || || || ||||||| ||| | || ||| |||| | | ||||||||||| Sbjct 158219 GGGCTGAACAGGGTGATATCTTCGCCTTTCAGCAGGCGCTGATACATCAGCTTGTTGAGC 158278 Query 43634 TGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGA 43693 || | ||| ||||| | || || | || || |||| || || |||||| ||||| Sbjct 158279 TGTACACCATAGTCCATGTGACGCACGCGGTTGCCTTCAACACCACGGTTGTTCTTCAGC 158338 Query 43694 ACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCG 43753 || || | |||| | ||| ||||||||||| || ||| | || || || ||||| || Sbjct 158339 ACCAGCAGGCTTTCGATTTCCAGATGCCACATCGGGTAGAACAGCGTGGCTGCGCCGCCA 158398 Query 43754 CGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATA 43813 || || || ||||| || || || ||||| |||||||||| || ||||||| ||| Sbjct 158399 CGAACGCCGCCCTGAGAACAGGACTTCACCGCGGTCTGGAAATGCTTGTAGAACGGGATA 158458 Query 43814 ATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCA 43873 || || ||| ||||||| | ||||| | || ||||| ||| || Sbjct 158459 CAGCCGGTATGGAACGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCACGGATACGACCG 158518 Query 43874 CCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCG 43933 ||||||||||||| || || || | | ||| | || |||| || | ||| ||| Sbjct 158519 GCGTTGATACCGATGCCGGCACGCTGAGAGACATATTTCACAATTGCGCTGGAGGTGGCG 158578 Query 43934 TTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTC 43993 || ||| || || |||||||| |||||| ||| || ||||| ||||| || || Sbjct 158579 TTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGCACACAGGAGCTGAACTGACGTGTT 158638 Query 43994 GGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 ||||| || || |||| | ||||||||||| || Sbjct 158639 GGGGTGCGTACGCCAGACATGATTGGCGTCGGCAG 158673 Score = 113 bits (124), Expect = 7e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 40715 CTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTT 40774 ||||||||| ||||||| ||| |||||| || |||||||| ||||| || || || Sbjct 156193 CTGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCAATCAGCTTGATGATTTTGGCATT 156252 Query 40775 GCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACG 40834 ||||||||| | |||||||| |||| | ||| | || || ||||| ||||||||||| Sbjct 156253 GCCTTCCATCAGCTCACGCTCAGCGAACGCGAAGGAACAGGCGAAGCTGACATAGAAACG 156312 Query 40835 AATCGCTTCCAAAGCGTTTACG 40856 |||||||||| || || ||| Sbjct 156313 GATCGCTTCCAGCGCATTGACG 156334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746161391496560