Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq1 352 8e-93 seq174 84.2 6e-12 >seq1 Length=970878 Score = 352 bits (390), Expect = 8e-93 Identities = 665/973 (68%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 1506 AGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCC 1565 ||| || | ||||||||| |||||||| | || |||||||| || || | || || || Sbjct 786016 AGGACGATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCCAGCACGCCAATCCC 786075 Query 1566 TATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAAC 1625 || | ||||||||||| || || || || ||||| |||| ||| |||||||| || || Sbjct 786076 AATAAGCTGAACGCCACCAAGAAACAGCACGGAAACCAGAATAGAGGGGTAGCCTGGCAC 786135 Query 1626 ATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACC 1685 || ||||| | || ||||| | |||||||| || || || || | | Sbjct 786136 CGGGTTACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATATAGAAAAGCTAGCGA 786195 Query 1686 TGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTAT 1745 || | | || || | || | ||| ||||| || |||| || ||||| || || | Sbjct 786196 GGCCACCAGAAAACCCAGATATGACCAGATGCGAAGTGGAACCGTAGAGAATGAGGTCAG 786255 Query 1746 TCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCG 1805 |||||||||||| || ||||| | ||||||||| |||||| | || || | || Sbjct 786256 TCCCTCCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACTGTGGCCCGCGATCCG 786315 Query 1806 TTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTT 1865 || | ||| |||||| || | ||| || |||||||| |||||||| || | ||||| Sbjct 786316 CTCAGTACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCAACTCAGAATCCCCTT 786375 Query 1866 CATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAA 1925 |||||| | || || |||| | || || ||||||||||| |||| ||| | Sbjct 786376 CATAAAGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAACTTCACGCGACATCAG 786435 Query 1926 CCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATA 1985 ||| || || || ||||| ||||| || | |||| |||||| | || ||||| || || Sbjct 786436 CCGGAAATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCTGTTATGCAGTTTGTA 786495 Query 1986 AAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCGCTTAGC 2045 |||||| || || || || || | ||||| | | ||| ||||| || Sbjct 786496 AAACCAGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCTGTCCATCCGCTTGGC 786555 Query 2046 CAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTCTATCGG 2105 || || ||||| || || ||| ||||||| | || | | ||||||||| || || Sbjct 786556 AAGAACAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGGGATAACAGTGATGGG 786615 Query 2106 ATCCTGTAAATCGACATCAATAGGAATGACCGCATCTCCGGTTGCATGGTCGAGACCCGC 2165 ||||||||||| |||||||| || || || ||||| |||||||| || || || || Sbjct 786616 GTCCTGTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGCGGCTTCCAGGCCGGC 786675 Query 2166 GAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATC 2225 || || || ||||| || ||||| || || ||||||| || || || |||||||| Sbjct 786676 AAACAGCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCTAAGTACCAGCGGATC 786735 Query 2226 AGATGCGGCT-ATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCATTAATAA 2284 | | | || | || | |||| | | | || |||||| | || ||||||| || || Sbjct 786736 -GCTCTGACTCAGTTGGGTAATCAGCGCATGCGTTGCATCTGTGCTGCCATCATCAACAA 786794 Query 2285 AAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTATAGAAAA 2344 |||| ||||||| | | || ||| | | | | | | |||| | ||| |||| Sbjct 786795 AAACAATCTCAACCTGCCAGGCTGCCAGCGCTTCATATTTTCTGACCGCGTCATAAAAAA 786854 Query 2345 TCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATCTTATATC 2404 || || || ||||| ||||| || || || || |||||||||||||| | | || Sbjct 786855 GAGGGATGACCTCCTCTTCATTAAATACCGGTACCACCAGAGAGATTTTCAT-TATTCTC 786913 Query 2405 CCTGAAA-ACAATGAATCTGGAATAGATAAAGCCGCATACCAGGCTAATTGCCGAGAAAG 2463 | | ||| || || || | |||| | | |||||| || |||| || || ||||| | | Sbjct 786914 CTTTAAATACGATAAAGCGGGAAAAAAGAAAGCCACACGCCAGACTGATAGCCGATGAGG 786973 Query 2464 TGATAAGGGTAAT 2476 |||| || ||||| Sbjct 786974 TGATCAGCGTAAT 786986 >seq174 Length=42168 Score = 84.2 bits (92), Expect = 6e-12 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 22009 ATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGC-TG 22067 |||| || | || ||||| |||||| | ||||| ||||| | | || ||| | Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAG-CAGCAGCCTA 27074 Query 22068 GCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAACTT 22127 |||||| || | || || || ||||||| ||| | ||||||||||| | | ||| Sbjct 27073 AAGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTT 27014 Query 22128 GACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAGCTGAGAATGATGCTCTTCGGC 22185 || || | |||||| |||||||| || ||||| |||||| || |||| |||||| || Sbjct 27013 GATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGC 26956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132319591664234