Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq13 123 2e-23 seq2 104 2e-17 >seq13 Length=199142 Score = 123 bits (136), Expect = 2e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27668 AGTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCAC 27727 |||||| ||||| |||| |||||| |||||| ||| |||| |||| |||||||||||| Sbjct 145336 AGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACGCAC 145395 Query 27728 AGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC 27787 || || |||||||| |||||||| | || || || |||||||||||||| |||||| Sbjct 145396 GGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGCATC 145455 Query 27788 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCACCTTCAA 27840 ||| || || | | || ||||| || || || || |||||||||| Sbjct 145456 TTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAA 145508 >seq2 Length=722220 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27655 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGCTGTTCACGCGTCAGTG 27714 |||||| | || ||| || || || |||| || || | |||||| || ||||||| Sbjct 515045 ATTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGTG 515104 Query 27715 CGTTAAAACGCACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGAT 27774 |||||| ||||||||||| || ||||| || || || | ||| || ||||| || |||| Sbjct 515105 AGTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGAT 515164 Query 27775 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCAC 27834 ||| | ||||||| ||| ||||| | | || || || || ||||| ||||| | Sbjct 515165 GTTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCGC 515224 Query 27835 CTTCAAT 27841 |||| || Sbjct 515225 CTTCGAT 515231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389444968082999