Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-30 seq174 102 2e-17 >seq3 Length=630259 Score = 145 bits (160), Expect = 2e-30 Identities = 242/349 (69%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 |||||| ||||| |||||||| |||| |||| ||| | ||||||||| ||| | || | Sbjct 51154 GCCACCCAGCATCTGCATGGTACCACCAACGTTAACCACGACTTCGGTGGTGTAACGCTC 51095 Query 32959 CTGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 33018 ||| |||| || ||||||||||| | || |||| | |||||| | ||| |||| || Sbjct 51094 CTGGCCACCCTGATCCTGCCATTTACGGGTGCGCAGCTGGCCTTCGATATAGACCTGCGA 51035 Query 33019 GCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTG 33078 |||||| ||| || || | || | ||| |||||||| || || |||||||||||| Sbjct 51034 TCCTTTTTTCAGGTATTCACCCGCGACTTCAGCCAGTTTGCCAAACAGCACCACACGGTG 50975 Query 33079 CCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGC 33138 |||||| || ||| || | || || || | || || ||||| ||| |||||||| Sbjct 50974 CCACTCAGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTTTCCGACGTAGC 50915 Query 33139 TATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCC 33198 | || | ||| || | || || ||| || | |||||||| || || || Sbjct 50914 CAGCGTAATGTTGGCAACAGCGCCACCATTTGGCATATAACGTACTTCCGGATCCTGACC 50855 Query 33199 AA----CCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 | ||||||| | |||||| || || ||||| | || ||||| Sbjct 50854 CAGATTCCCGACA----AGAATCACTTTGTTAACGCCACGACTGGCCAT 50810 >seq174 Length=42168 Score = 102 bits (112), Expect = 2e-17 Identities = 223/334 (67%), Gaps = 13/334 (4%) Strand=Plus/Minus Query 45180 ATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATACCGTTACTCATAAGC-TG 45238 ||||||| | || ||||| | |||||| | |||||| || || | | || ||| | Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAG-CAGCAGCCTA 27074 Query 45239 ACGCTGGCGAACGCGACAATTACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTC 45298 | |||||| || | || || || | ||| || | | ||||||||||| | || || Sbjct 27073 AAGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTT 27014 Query 45299 GATGCAAGATATATAAAGGAATTAGCCGATGCGAAAGCTGAGAATGATGCTTTGC-GCGA 45357 ||||| | ||| | ||||| | || ||||| |||||| || |||| || | | || Sbjct 27013 GATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAG 26954 Query 45358 TGATGTCNNNNNNNNNNNNNNNNNCCTGCTCGTCAACGCCACCTGTCCCGCAATGCCAAC 45417 || || |||| | ||||||| | ||| |||| || Sbjct 26953 TGC-GTTAGTTCTGGTAAATGCGGGCTGCGCCTCAACGCAATCTG-CCCGAAA------- 26903 Query 45418 AGGTAAATCCACCTCCGCCGCCAGCGTGGATAATGCATCCCGCCCCAGACTGGCAGACTC 45477 ||||| || || | || || |||||||| ||||| || || || |||| | ||| | Sbjct 26902 -GGTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 45478 CGCTCAACGGGATTATTTCACCCTCAAAGAGCGA 45511 |||||||||||||||||||||||||| ||||||| Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAGCGA 26810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149947058365036