Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq174 154 6e-33 seq4 102 3e-17 seq9 96.9 1e-15 >seq174 Length=42168 Score = 154 bits (170), Expect = 6e-33 Identities = 233/328 (71%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 6859 ATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAGCTGG 6918 ||||||| | || ||||| |||||| | |||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 6919 AGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCTGCACTTG 6978 ||||||| |||| ||||| ||| |||||||| | | ||||||||||| | || |||| Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 6979 ATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTTC-GCGCT 7037 |||| | |||| | | ||| | || ||||| | |||| | ||| |||||| || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 7038 GACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGTCCCGTGCGT 7097 | |||| ||||| | || | ||||| ||||||| | ||| |||| | Sbjct 26952 G-CGTTAGTTCTGGTAAATGCGGGCTGCGCCTCAACGCAATCTG-------CCCGAAAGG 26901 Query 7098 GAA-GCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACACCGC 7156 || ||| |||||||| || |||||||| ||||| || || ||||||| | ||| |||| Sbjct 26900 TAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGC 26841 Query 7157 TGAACGGGATTATTTCACCCTCAGAGAG 7184 | |||||||||||||||||||||||||| Sbjct 26840 TCAACGGGATTATTTCACCCTCAGAGAG 26813 Score = 114 bits (126), Expect = 5e-21 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38345 TTTATCTGGGGAAGGAATTATGCCCCACGTCACTGAAAAAATGCTGGGGCATGAACTTGG 38404 |||| | | |||||| ||| |||||| |||| ||| ||||||||||||||||| ||||| Sbjct 40939 TTTAGCAGAGGAAGGGATTGCGCCCCATGTCATTGAGAAAATGCTGGGGCATGACCTTGG 40880 Query 38405 GGGAGTTATGGCCGTGTATAATAAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGA 38464 ||||| | || || ||||| || ||||| ||||| ||||||| || | ||| ||||| Sbjct 40879 AGGAGTGCTTGCAGTTTATAACAAGCACGATTGGTTAGCGGAACAAAAGGTTGCTTATGA 40820 Query 38465 GTTGTATGCTGATAAAATTTT 38485 | || ||||| || ||||| Sbjct 40819 ACTTTACGCTGACAAGATTTT 40799 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 59897 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 59956 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 59957 CCAGCAAGGGCCACCATAT 59975 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 >seq9 Length=205880 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 51301 TTTCATTCTGAACCATGAGTACGATACTAAAGCACTTGCAAAAACTTTCAGTTCAACCAT 51360 |||| | ||||||||| |||| || ||| ||||| |||||| ||||||||| | Sbjct 173488 TTTCTGTTTGAACCATGGGTACAATGTTAACTGACTTGATAAAACTGTCAGTTCAAAT-T 173546 Query 51361 AATACGTACTGAAAGTACGAAAAAGGA--TATTCCT---ATGCAA-AATCTTGATGAGCC 51414 || | ||||||||||| | ||| | ||| | || || || |||| | Sbjct 173547 AAAGTGAACTGAAAGTACTATTGAGGGGGTTTTCATGTCATTCATTAACCTTG------C 173600 Query 51415 GATTAAAGGTGTCGGCATCCCTGAAGTTGCGAAGGCTTGTGGAGTTAGCGAAAGGGCTGT 51474 ||||| ||| || | ||||||||||||| || |||||| | || ||| || || Sbjct 173601 AATTAAGTCTGTGGGAGTTGCTGAAGTTGCGAAAGCGTGTGGAATCAGTCCAAGAGCGGT 173660 Query 51475 CTATAAGTGGCTCAAAAACGGCTTCCTCCCTAAGACTGAGTTTTTTGGGAAAACTAAATA 51534 ||| ||||||||||| || || | || ||||| || ||||||| |||| |||| |||| Sbjct 173661 CTACAAGTGGCTCAACAAGGGTTCACTTCCTAAAACAGAGTTTTATGGGGGAACTCAATA 173720 Query 51535 CGCA 51538 ||| Sbjct 173721 TGCA 173724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192625430275600