Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq42 122 7e-23 seq155 116 3e-21 seq85 111 1e-19 seq556 104 2e-17 seq3964 98.7 8e-16 seq75 82.4 6e-11 >seq42 Length=101213 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 |||||| ||||| || ||| | || || || ||| |||| || || || || | |||| Sbjct 46345 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 46286 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| | |||| || || ||||||||||| || || || || || || || Sbjct 46285 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 46226 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 |||||| || ||||||||||| ||| | |||||| ||||||| | |||| |||||||| Sbjct 46225 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 46166 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || ||| | || || || Sbjct 46165 CCAAAAGGAGTCGACCCTCCACTTGGT 46139 >seq155 Length=45769 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | || || || || |||| || || || || | ||| Sbjct 4068 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4009 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | ||| | |||| || || ||||||||||| || || || || || || | Sbjct 4008 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 3949 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 ||||||| || ||||||||||| ||| | |||||| ||||||| | |||| ||||||| Sbjct 3948 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 3889 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | ||||| || || ||| | || || || | || |||| || ||| Sbjct 3888 TCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGT 3842 >seq85 Length=66337 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| |||||||||| || || || || | ||||| || ||| |||| || || || | Sbjct 65981 TTGTTCAGATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCG 66040 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | || | || || | ||| | |||| || || |||||||||||||| ||||| | Sbjct 66041 AGTCCTCGGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTC 66100 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || || || | || ||||| ||||| ||| | |||||| |||||| || ||| Sbjct 66101 CAGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCG 66160 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || || || || || | || || ||| | || | || || ||| Sbjct 66161 ATTACAATATCCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTCCGAGGTGGT 66216 >seq556 Length=10369 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| || || || || | | Sbjct 27 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 86 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 87 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 146 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | |||||| |||||| || |||||||||| Sbjct 147 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 206 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 207 ATCCAGAAGGAGTCGAC 223 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| || || || || || | Sbjct 255 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 314 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||| ||||| || || || Sbjct 315 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 374 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| ||||| ||| | |||||| |||||| || |||||||||| Sbjct 375 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 434 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 435 ATCCAGAAGGAGTCGAC 451 >seq3964 Length=299 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || ||| |||| || || || || || | || || | ||| | |||| Sbjct 299 ACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAACGTCAAGACC 240 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| ||||| || || ||||||||||| || || || ||||| Sbjct 239 AAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAACAACGTCTCATCTTCGCTGGCAAG 180 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| || ||||||||||||| || || || || || | || Sbjct 179 CAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATCCAGAAGGAGTCGACGCTCCAC 120 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||| | || || ||| Sbjct 119 TTGGTGCTGCGTCTCCGTGGTGGT 96 >seq75 Length=70221 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || || || | | Sbjct 216 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 275 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| |||||||| || ||||| || || || Sbjct 276 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 335 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | |||||| ||| || || | ||||||||| Sbjct 336 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAAC 395 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || |||| | || || ||| Sbjct 396 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGT 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419695419794485