Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq174 136 1e-27 seq9 122 3e-23 >seq174 Length=42168 Score = 136 bits (150), Expect = 1e-27 Identities = 231/330 (70%), Gaps = 10/330 (3%) Strand=Plus/Minus Query 45976 ATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGTGATAAAAAAGTCAGTGAGCTGA 46035 ||||||| | || ||||| | |||||| | |||||||| | | ||| || | Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 46036 AGCAGGCGACCGCCACCATCGCTGACATGCAGCAGCGTCAGCGTGATGTTGCTGCGATCG 46095 ||| ||| | | ||||||| || | |||||| | | ||||||||||| | ||| | | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 46096 ATGCAAAATACACGAAGGAGTTAGCCGATGCGAAAACTGAAAATGAAACTCTGC-GCGCT 46154 |||| |||||||| |||||| | || ||||| ||| || | ||| |||| | || | Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 46155 GATGTTGCCGCTGGTCGTAAGCGC-CTGCGGGTCAATGCCAGTTGCTCCGCAGCCGTGCG 46213 | ||| ||||| | ||| ||||| |||| || | ||| | || | Sbjct 26952 GC-GTTAGTTCTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGCCCGAAAG------G 26901 Query 46214 TGAAGCCACCGGACCCACCAGCATGGATAATGCAACCAGCCCCCGACTGGCAGACACCGC 46273 | | ||| |||| ||||| || ||||| ||||| ||||| ||||||| | ||| |||| Sbjct 26900 TAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGCCGC 26841 Query 46274 TGAACGGGATTATTTCACCCTCAGAGAACG 46303 | ||||||||||||||||||||||||| || Sbjct 26840 TCAACGGGATTATTTCACCCTCAGAGAGCG 26811 Score = 114 bits (126), Expect = 4e-21 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 35544 TAACCACAG-AACGATGAGGCTAACCGTGGGTAAGCATCACTGGAAAGTAGAAAAACAGC 35602 ||||||||| || || | | ||||||||| | || | |||||| |||||||||| || | Sbjct 34722 TAACCACAGTAAAGAGG-GCTTAACCGTGGATCAGAAGCACTGGCAAGTAGAAAAGCAAC 34664 Query 35603 CTGAGTGGTACGTGAAAGCTGTCAGAAAAACTATCGCGGCGCTGCCGGGGGGTTACGCTG 35662 | | ||| ||| || | | ||| || ||| | || ||||| || || || | Sbjct 34663 CAGCATGGCTGGTGGCGGCAATTAAAAAGACCATCTCAAGTCTTCCGGGTGGGTATGCAG 34604 Query 35663 AAGCTGCTGAGTGGCTGGATGTAACAGAGAACGCTTTATTCAACCGCCTTCGTGCAGATG 35722 |||| ||||| ||| ||| || || || | || || |||||||| |||||| | ||| Sbjct 34603 AAGCAGCTGAATGGTTGGGCGTGACTGAAGATGCATTGTTCAACCGTCTTCGTACCAATG 34544 Query 35723 GCGATCAGATTTTCCCGCTGGGATGGGCAATG 35754 |||||||||||||||| |||| ||||| ||| Sbjct 34543 GCGATCAGATTTTCCCAATGGGCTGGGCGATG 34512 >seq9 Length=205880 Score = 122 bits (134), Expect = 3e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 27218 ATGGCGCTGTCTGATGCGTGGTTGCGTTCAGTCGTTGGAAAGGAACGTGATAAGGTTTTG 27277 |||||||| || ||||| |||||||| | | || || ||| || || || | Sbjct 160021 ATGGCGCTTTCAGATGCTGCCCTGCGTTCAATGCTGGGCAAAGAATACGAAAAAGTGCAG 160080 Query 27278 GTTAAATCCGATCGTGATGGTCTGTCTGTCAGAGTATCACCGAAAGGTCGCGTAGTGTTC 27337 ||||| | |||||||| || || |||| | | ||||| | ||| || ||| Sbjct 160081 GTTAAGACAGATCGTGACGGGCTTTCTGCCCGCGTATCCTGCAGGGGTAAAATAACGTTT 160140 Query 27338 CAATATCGTTATCAATGGGCAGGGAAAGGTGAGCGCCTTGATATCGGAACTTACCCGGCA 27397 || || ||||| | ||| |||||||| |||||| |||||||||| || |||||||| Sbjct 160141 CAGTACCGTTACCGCTGGAACGGGAAAGGGGAGCGCGTTGATATCGGTACATACCCGGCG 160200 Query 27398 ACTGGATTAAAAGAGGCCAGAGAAGAAGTTATCCGTCTCCGTGGTGAACTCGAGTCAAAC 27457 || || ||||||||||| | || || | ||||| || ||||| || ||||| |||| Sbjct 160201 ACCGGTTTAAAAGAGGCGCGTGACGAGGCCATCCGGCTGCGTGGCGAGCTCGAACAAAAC 160260 Query 27458 CGCAATCCACGATTAGTCAA 27477 || ||||| || |||| || Sbjct 160261 CGTAATCCCCGCATAGTGAA 160280 Score = 91.5 bits (100), Expect = 4e-14 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 28238 CATGATTTGAGACGAACAGCACGAACAAACTTTTCTGATCTTACTGCACCTCATATTGCA 28297 |||||| || ||||||| || || || || |||| ||||| |||| ||| || |||| Sbjct 161041 CATGATCTGCGACGAACGGCCCGCACCAATCTTTCCGATCTGACTGAACCGCACGTTGCT 161100 Query 28298 GAAATAATGCTCGGTCATAAACTGCCAGGGGTATGGCAGGTTTATGAC 28345 ||||||||||| || |||| |||||||||| |||||||| || ||| Sbjct 161101 GAAATAATGCTGGGACATACCTTGCCAGGGGTCTGGCAGGTGTACGAC 161148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150334229080374