Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq13 196 2e-45 >seq13 Length=199142 Score = 196 bits (216), Expect = 2e-45 Identities = 428/636 (67%), Gaps = 4/636 (1%) Strand=Plus/Minus Query 59917 ACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAACAGCTTTC 59976 |||| | ||| |||||||| ||||||||||||| ||| || | |||||||| | | | Sbjct 179384 ACATGATGTAGGGATAGCCCGACTCAAACTGAATCTCGGCCAGCGTCTGGAAGAAGTCGC 179325 Query 59977 GAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTACATCTCGG 60036 | | | ||| |||| ||| || | || || ||| | ||| || ||||| Sbjct 179324 GTGGCTGAATATAGGTTTTACGAATGCGTTCGTCGGCCAGCATCTCGTCATATTTCTCGC 179265 Query 60037 TTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGGAGAGAATA 60096 | | | || ||| | | || ||||| | | | | ||| ||||| ||||| | Sbjct 179264 TGATGCTGATATCGCCAAAGGCCTGACCGTAGATCCGTTCAACGTCGTAAGGCGAGAACA 179205 Query 60097 GGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGATAACTCCTA 60156 | ||||| || | | |||| || || || |||| |||| ||| || | | || || | Sbjct 179204 GCGCCATCGGTTTGTTCTCTTTTGCCAGCTGGAAGGTGATATCGGGGATCACTACGCCCA 179145 Query 60157 GGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCCAGGAA-C 60215 | || || || || || ||||||||||| ||||||||||| ||||||||||| ||||| | Sbjct 179144 GCGACAGGGTTTTGATGCGGATCTTCTCATCGGCGTTTTCGCGCTTGGTATCAAGGAAGC 179085 Query 60216 GCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCTTGCACCC 60275 | || || ||||| ||||| || || | | ||||| || |||||||| | || || Sbjct 179084 GGAA-AATATCGGGATGGTGCGCATTGAGCCACACCGCGCCAGCGCCCTGACGCGCGCCA 179026 Query 60276 AGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGACTCCAGAG 60335 || || || | || |||||| ||| || || || |||||||| ||||| || || || Sbjct 179025 AGCTGATTCGCATAAGAGAAGGCATCCTCCAGCATTTTCATCACCGGGATAACGCCCGAC 178966 Query 60336 GCCTGACCTTCTCGACCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGAATCCAATG 60395 | |||| ||| || || || || || || | ||| || ||||| || | || | Sbjct 178965 GACTGATTTTCAATACGTTTGATTGGCGCACCGGACTCACGCAGGTTCGACAGCAAAAAG 178906 Query 60396 CCGACTCCGCCACCACGCTTAGACAGCTGGAGAGAGTCCTGAACGATTCGACCGATGGAC 60455 |||| ||||| || ||||| || ||||| || | | ||| ||||| || ||| Sbjct 178905 GCGACGCCGCCGCCGCGCTTTGAGAGCTGCAGTGCCGAATTCACGGCGCGACCAATCGAC 178846 Query 60456 CCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGCCTGCGTCGAGAAGC 60515 |||| |||| | | || | |||||| || || ||| || |||| | Sbjct 178845 TCCATATTGTCTTCGATGCGCAGCAGGAAGCAGGAGACCAGCTCACC-GCGTTGCTGTTT 178787 Query 60516 CCCGC-GTTGAGGAAGGTCGGAGTTGCAGGCTGGAA 60550 |||| ||| |||||||| || || || |||||||| Sbjct 178786 GCCGCAGTTCAGGAAGGTTGGTGTAGCGGGCTGGAA 178751 Score = 111 bits (122), Expect = 7e-20 Identities = 237/351 (68%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 58451 TCGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAAT 58510 ||| ||||| || || | || | ||| || || ||||| ||||||||| ||| || Sbjct 180367 TCGAATGTAATAGAGCGTTTTGATGCCTTTTTTCCATGCGTAAATCTGCGCTTTGTTGAT 180308 Query 58511 GTCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCA 58570 ||| || || | | ||| ||||||||||||| || |||| |||||| || || Sbjct 180307 GTCACGGGTCGAGACGTCATCGCGGAAGAACAGCGTCAGCGACAGGCCCTGATCGACATG 180248 Query 58571 AGGAGATGCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCGCTATC 58630 | | ||| | ||||| ||||||| |||| | || || || || || ||| Sbjct 180247 CTGCGTCGCTTCTGCGTAGGTATCAATAATCGCTTCCGGCCCAATCTGATACGC---ATC 180191 Query 58631 A--ATTGAT-TCTACATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAG 58687 || || | | |||||||||||||| | || || ||||| || || Sbjct 180190 CTGATAGAGATGGAGATTCTCATTGGTCATAAACGGCGCGGGATAGTAGACGCGGCCGGT 180131 Query 58688 CTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATG 58747 || ||||| ||||| | ||| | ||| ||| | || || || || |||||||| Sbjct 180130 TTTGCCCTCTTTGCGGATCTCGATAGGGGAGACAATCGGATGGATGCTGGAGGTGGCATG 180071 Query 58748 GTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTT 58798 ||| ||||| ||||| || |||||||| ||||||||||| |||||||| || Sbjct 180070 GTTGATGTAAGAGATTGAACCGGTTGGCGGGATCGCCTGCAGGTTCTGATT 180020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225710478498860