Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq13 118 1e-21 seq3 84.2 2e-11 >seq2 Length=722220 Score = 131 bits (144), Expect = 2e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 53316 AATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGA 53375 ||||| || || | || ||||| || | || || || ||||||| ||| |||||| Sbjct 515044 AATTACAGTGACTTAGTGAAGGTTCGGGTAATCACATCCTGCTGCTGCTCTTTAGTCAGT 515103 Query 53376 CTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGA 53435 || |||||||| |||||||| ||||||||||| || || ||||| || ||||| ||| Sbjct 515104 GAGTTAAAGCGCACAGCGTAACCGGAAACGCGAATGGTCAGTTGCGGATATTTCTCTGGA 515163 Query 53436 TGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCA 53495 ||||| | || ||||||| |||||| || || |||||||| || | |||||||| Sbjct 515164 TGTTCCATCGCATCCAGCAGCATTTCACGGTTCATAACGTTAACGTTGAGGTGCTGACCG 515223 Query 53496 CCTTCGA 53502 ||||||| Sbjct 515224 CCTTCGA 515230 >seq13 Length=199142 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||| ||||||||||| | || ||||| |||||||| || || || || || || || Sbjct 145333 TTCAGTAAAGGTACGGGTAATCACGTCGCGCTGCTGCTCAGGCGTGAGTGAGTTAAAACG 145392 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 ||| || || || |||||||| || || |||||||| || || |||||||||| ||| || Sbjct 145393 CACGGCATAGCCTGAAACGCGGATAGTCAGCTGCGGATAGTTTTCAGGATGTTTAACTGC 145452 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGACA 53504 || || | |||| || || ||||| || |||| |||||| |||||||| ||| Sbjct 145453 ATCTTCCAGCGTTTCGCGGCGCAGAACGTTGACGTTCAGATGCTGTCCACCTTCAACA 145510 >seq3 Length=630259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34487 TCAAAGTCGATTTTCTCAAATGGAGTGACTTTCCGGTCTACGTCGAGGTGGAATGAGTTG 34546 |||||||||||||| || | ||| |||| ||| || |||||||| ||||| |||| Sbjct 228526 TCAAAGTCGATTTTGTCGTAAGGATTGACCTTCTTCTCAACGTCGAGATGGAAGCTGTTG 228585 Query 34547 GTGTACCAGTCTTTATCGGTAGCGCCCTTAACAATACCAAATTGCTCTCGGTCCAGTCGA 34606 ||||| || | || |||||| |||| || | ||||| ||| | || || || Sbjct 228586 GTGTAGTAGCCCTTGTCGGTAACGCCTGGCACCAGGCCAAACTGCGCCGCATCAAGACGG 228645 Query 34607 TTAAATCGATAGCAAAGGCTCTCGGCTGGCGTACCGTAAAGACTAAACCCAAGTCCGGTT 34666 || || | ||| || ||||| |||||| | |||||| || |||||| || ||| Sbjct 228646 CAGAAGCGGTCGCACAGATTCTCGCTTGGCGTGCTGTAAAGGCTGAACCCATAGCCTGTT 228705 Query 34667 TCGTCCTTCCA 34677 || | ||||| Sbjct 228706 TCTGCTTTCCA 228716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525494160765200