Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq174 138 5e-28 seq4 102 3e-17 seq9 96.9 1e-15 seq15 87.8 7e-13 >seq174 Length=42168 Score = 138 bits (152), Expect = 5e-28 Identities = 232/331 (70%), Gaps = 16/331 (5%) Strand=Plus/Minus Query 29329 ATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAGCTGG 29388 ||||||| | ||| || | |||||| |||||||| || | | ||| || Sbjct 27132 ATTACCGAGGCAATGCCATTGACTACAAGGCGCAGCGTGACACGGCAAGCAGCAGCCTAA 27073 Query 29389 AACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCG 29448 | | ||| |||| |||||| ||| | |||||| | | ||||||||||| | ||||| | Sbjct 27072 AGCTGGCTAATGACACCATCACTTATATGCAGACGAGACAGCGTGATGTGGACGCGCTTG 27013 Query 29449 ATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGC----GT 29504 |||| |||||| | | |||| | || ||||| | |||| | ||| |||| | || Sbjct 27012 ATGCGAAATACACCAAGGAGCTGGCAGATGCCAAAGCTAAGCTTGATTCTCTTCAGCAGT 26953 Query 29505 GCTGATGTTGCCGCTGGTCGTAAGCGC-CTGCGGATCAACGCCACCTGCTCCGGTACCGT 29563 || ||| ||||| | ||| ||||| ||||||| | |||| ||| | Sbjct 26952 GCGTTAGTT----CTGGTAA-ATGCGGGCTGCGCCTCAACGCAATCTGC-CCGAAAG--- 26902 Query 29564 GCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGACAC 29623 || | ||| |||||||| ||||||||||| ||||| || || ||||||| | ||| | Sbjct 26901 --GTAACGCCTCCGGCACCACCGGCGTGGATGATGCAGCCAGCGCCCGACTTACTGACGC 26844 Query 29624 CGCTGAACGGGATTATTTCATCCTCAGAGAG 29654 |||| ||||||||||||||| |||||||||| Sbjct 26843 CGCTCAACGGGATTATTTCACCCTCAGAGAG 26813 >seq4 Length=447486 Score = 102 bits (112), Expect = 3e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 22825 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 22884 ||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 299226 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAC 299285 Query 22885 CCAGCAAGGGCCACCATAT 22903 |||||| ||||||||| || Sbjct 299286 CCAGCAGGGGCCACCAAAT 299304 >seq9 Length=205880 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 12767 TTTCATTCTGAACCATGAGTACGATACTAAAGCACTTGCAAAAACTTTCAGTTCAACCAT 12826 |||| | ||||||||| |||| || ||| ||||| |||||| ||||||||| | Sbjct 173488 TTTCTGTTTGAACCATGGGTACAATGTTAACTGACTTGATAAAACTGTCAGTTCAAAT-T 173546 Query 12827 AATACGTACTGAAAGTACGAAAAAGGA--TATTCCT---ATGCAA-AATCTTGATGAGCC 12880 || | ||||||||||| | ||| | ||| | || || || |||| | Sbjct 173547 AAAGTGAACTGAAAGTACTATTGAGGGGGTTTTCATGTCATTCATTAACCTTG------C 173600 Query 12881 GATTAAAGGTGTCGGCATCCCTGAAGTTGCGAAGGCTTGTGGAGTTAGCGAAAGGGCTGT 12940 ||||| ||| || | ||||||||||||| || |||||| | || ||| || || Sbjct 173601 AATTAAGTCTGTGGGAGTTGCTGAAGTTGCGAAAGCGTGTGGAATCAGTCCAAGAGCGGT 173660 Query 12941 CTATAAGTGGCTCAAAAACGGCTTCCTCCCTAAGACTGAGTTTTTTGGGAAAACTAAATA 13000 ||| ||||||||||| || || | || ||||| || ||||||| |||| |||| |||| Sbjct 173661 CTACAAGTGGCTCAACAAGGGTTCACTTCCTAAAACAGAGTTTTATGGGGGAACTCAATA 173720 Query 13001 CGCA 13004 ||| Sbjct 173721 TGCA 173724 >seq15 Length=176901 Score = 87.8 bits (96), Expect = 7e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 59716 TTTACATCCACTTCAACACTGCTCAGGTCTTTATCAATTTCACCCTCAATTCTTACTTTG 59775 |||||||| | ||||||||| || ||||||||||| |||||| |||| | ||||| Sbjct 123890 TTTACATCAATCTCAACACTGTTCCAGTCTTTATCAACTTCACCTTCAAGACGGACTTTA 123831 Query 59776 TCTTTCGGAGA-AACATTCTGACCGGCCCATATGCTGTCATCGATATCCGTGAC---AAT 59831 || |||| || ||| | || || ||| ||||||| ||||| ||| ||| Sbjct 123830 TCACTCGGTGATAACGAT-TGTCCCATCCAGCGCTTGTCATCAATATC---GACATTAAT 123775 Query 59832 TGTCCCGCTATTGTCACGAAACTCATAACGTTCATCACCCACTTTTTTAACGATGCTCCC 59891 || ||| || || ||||||||| |||||| ||||||| | | | |||| | || Sbjct 123774 CGTTCCGGTAGCATCTTTGAACTCATAAAGTTCATGCCCCACTTGTCTGATGATGTTACC 123715 Query 59892 TTCAAGGATAACCCATGCATCATC 59915 ||| || | |||||||| ||||| Sbjct 123714 TTCCAGAACGACCCATGCGTCATC 123691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202723462939804