Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010545.1_202016-07-09] 6,369 sequences; 30,522,918 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq1 226 8e-55 >seq1 Length=970878 Score = 226 bits (250), Expect = 8e-55 Identities = 601/911 (66%), Gaps = 14/911 (2%) Strand=Plus/Plus Query 20137 CAAAATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAG 20196 ||||||||| || || || ||||| |||| | ||||| | ||||| || ||||| || Sbjct 786004 CAAAATATAGCGAGGACGATTTTTGGTTTCCATGTAAATGCGGCCGATATATTCACCCAG 786063 Query 20197 GACACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATGATGG 20256 || ||||| || || | ||| || || ||||| || || | ||||| | | || || Sbjct 786064 CACGCCAATCCCAATAAGCTGAACGCCACCAAGAAACAGCACGGAAACCAGAATAGAGGG 786123 Query 20257 ATATCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAAT 20316 || ||||| || || || || || | ||| || | |||||||| |||||| | Sbjct 786124 GTAGCCTGGCACCGGGTTACCAAACAGCAACTTATCCAGGATCATCCAGAGTCCATATAG 786183 Query 20317 GAAGGAC-GCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTG 20375 || | ||| | || ||| || ||| | || | ||| || || | || | || | Sbjct 786184 AAAAGCTAGCGAGGCCACCAGAAA-ACCCAGATATGACCAGATGCGAAGTGGAACCGTAG 786242 Query 20376 AGAAACTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTGAGT 20435 |||| || | || || || || || ||||| || |||||||| ||||| || Sbjct 786243 AGAATGAGGTCAGTCCCTCCAGCGCAAGATTCCACAGCTTCCAGCCGCCGAATTTACTGT 786302 Query 20436 TGCCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACCCATG 20495 ||| || | ||||||| | ||| || || | |||| | ||||| || ||||| Sbjct 786303 GGCCCGCGATCCGCTCAGTACGCACATATTCTACGATATCAGTCTTTCCGCCGACCCAAC 786362 Query 20496 ACAAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACAACTT 20555 || || || ||||| || ||||| ||| || || || || || || || ||||||| Sbjct 786363 TCAGAATCCCCTTCATAAAGAGATTCTTCTCGGGCAGCAGCTTAATATTCTCGACAACTT 786422 Query 20556 CTCGCGACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGT 20615 | |||||||||| ||||||||||| || || ||||| || | || | ||| || ||| Sbjct 786423 CACGCGACATCAGCCGGAAATCACCGACATTCTCTTCTATCTGCGGATGGCTGATGCTGT 786482 Query 20616 TGTGTAGCTTATAGAACCACTCAGCCGATTTGCGCTTTAGCCTTCCATCGGTAGAGCGGT 20675 | || || || || ||||| || | |||||| || || ||||||| | | || Sbjct 786483 TATGCAGTTTGTAAAACCAGCGGGCGGTTTTGCGTTTGAGGTGGCCATCGGCACTTCTGT 786542 Query 20676 CTGCTCTTTTAGCCAGAACCATATCAGCGCCATCTAGCCACCTATCAATGAGTTTAGGAA 20735 | | || || ||||| |||||||| || | |||||| | | || | | ||| | Sbjct 786543 CCATCCGCTTGGCAAGAACAATATCAGCACCCGCCAGCCACTTGTTGATCATCTCAGGGA 786602 Query 20736 TAACATCGATAGGGTCTTGCAGATCAACGTCGATTGGGATAACAGCTTCACCAGTAGCAT 20795 ||||| ||| ||||| || | ||| || || || |||||||| || || || || || Sbjct 786603 TAACAGTGATGGGGTCCTGTAAATCCACATCAATCGGGATAACGGCATCGCCGGTTGCGG 786662 Query 20796 TATCAAGACCTGCGAATAGGGCTGGCTCTTTGCCAAAGTTTCTAGTGAACGATAG---TG 20852 || || || || || || || || || ||||| || || | | | ||||| || Sbjct 786663 CTTCCAGGCCGGCAAACAGCGCGGGTTCCTTGCCGAAATTACGAATAAACGACAGGCTAA 786722 Query 20853 GTACCA-CTAATTTATCAGATACAGCAAGCGCATTGATGATTGATTCTGTCGAATCGCTG 20911 |||||| | || || || ||| | | || | | | || | ||| || Sbjct 786723 GTACCAGCGGATCGCTCTGACTCAGTTGG----GTAATCAGCGCATGCGTTGCATCTGTG 786778 Query 20912 CTTCCGTCATTGATGAAGACTATCTCAACTT--CATGCTCCTTTAGGCCTTCAAACTCGC 20969 || || |||| | || || |||||||| | || ||| | || ||||| | | | Sbjct 786779 CTGCCATCATCAACAAAAACAATCTCAACCTGCCAGGCTGC--CAGCGCTTCATATTTTC 786836 Query 20970 GTACCGTTTTATAAAAAATAGGTATCGTGGCCTCTTCGTTAAAGACCGGAACGACTAAAG 21029 |||| | |||||||| ||| || ||||||| ||||| ||||| || || | || Sbjct 786837 TGACCGCGTCATAAAAAAGAGGGATGACCTCCTCTTCATTAAATACCGGTACCACCAGAG 786896 Query 21030 AAATTTTCATT 21040 | ||||||||| Sbjct 786897 AGATTTTCATT 786907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137519198378484